Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0634 ATGAACTGCTCTATGTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAACTCTGGATTACTCTTCGAGAAGCGTTTAATCGAGAAGCACATTTCAGAATATGGGAAATGCCCTGTTACTGGTGAACCCCTTTCCATCGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTAGAGCAACAGCTGCATACAGCTAGGCAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCCGCATGTCGTGTAATTGCAAGACTTAAGAAGGAACGGGATGAGGCCAGGTCATTACTTGCTCAGGCAGAGAGGCAGATGCCCTTGTCATCAACGTCAATTTCATCCAATGTTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCGGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAAAGTTACACTCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCAACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACATTGAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTTGCCCGAGATAACTTATTCTTGACTGGTTCAGCTGACAAGACTGTTCGTGTGTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCACACGGCTGAGGTCCAAGCTGTTACCGTCCATGCTACTAATAACTTCTTTGTCACCGCCTCCCTTGATAACACATGGTGCTTTTATGAGCTTGCTTCAGGATTATGCCTGACCCAGGTTGCAGAGGCTTCAGGAACGGAGGGGTACACATCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACCGGCACGTCAGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCCTTTTCTGAAAATGGTTACTTCCTTGCGACTGCGGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAGTTGAAGAATTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGACCATAGTGGATCTTACCTCGCAATTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAATCTGACTGGAATTGTATCAAAACTATTCCAGATTTGTCTGGCACAGGTAAAGCAACCTGCCTAAAATTTGGCCCGGATGCAAAATACTTGACAGTCGGATCCATGGATCGAAATCTTCGGATTTTCGGTGTGCCTGGGGAAGATGGTCCCATGGAGACATAA 1566 44.57 MNCSMSGEIPEEPVVSKNSGLLFEKRLIEKHISEYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNVAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVARDNLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVAEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSDWNCIKTIPDLSGTGKATCLKFGPDAKYLTVGSMDRNLRIFGVPGEDGPMET 521
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 5159565 5168676 - Tan0000904.1 Tan10g0634 765428
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0634 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 511 IPR038959 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Tan10g0634 521 SMART Ubox_2 1 66 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan10g0634 521 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Tan10g0634 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Tan10g0634 521 Gene3D - 199 512 IPR015943 GO:0005515(InterPro)
Tan10g0634 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Tan10g0634 521 FunFam pre-mRNA-processing factor 19 196 512 - -
Tan10g0634 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan10g0634 521 SUPERFAMILY WD40 repeat-like 219 510 IPR036322 GO:0005515(InterPro)
Tan10g0634 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Tan10g0634 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Tan10g0634 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 Coils Coil 113 133 - -
Tan10g0634 521 CDD RING-Ubox_PRP19 1 54 - -
Tan10g0634 521 SMART WD40_4 339 380 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 SMART WD40_4 297 336 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 SMART WD40_4 252 291 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 SMART WD40_4 383 421 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 SMART WD40_4 424 463 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 SMART WD40_4 207 249 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 SMART WD40_4 470 511 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 Pfam WD domain, G-beta repeat 299 335 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 Pfam WD domain, G-beta repeat 473 510 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 Pfam WD domain, G-beta repeat 355 380 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 CDD WD40 223 510 - -
Tan10g0634 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515(InterPro)
Tan10g0634 521 SUPERFAMILY RING/U-box 1 53 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0634 Tan-Chr10:5159565 Tan02g1413 Tan-Chr2:52168718 2.60E-09 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0634 K10599 - csv:101204424 990.334