Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0689 ATGGATTACTCAGGATTCTTCTCCTCGGCGTCCGATTTCTCATCGGAGTCATCGTTTGGTTCGCCGGAACCGTCCTTCTTGAATTTGGACCACAATTTTCTACCTTTCAATGAGAATGACTCGGAGGAAATGCTTCTGTATGGGCTGATCTCGGAGGGGACACACGAGTCGTTGGAGATGGGTATCGGTACGGTGCGAGTGAAGGAAGAGGAAGTCGATTCGGTCGGTGAAGAGAGTCCGAAGAAGGAGAAGGCTTACAGGGGAGTTCGCCGGCGGCCATGGGGGAAATTTGCGGCGGAAATTAGAGATTCCACCAGACATGGCATAAGGGTTTGGTTGGGGACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCCTATGATCAAGCGGCCTTTTCGATGAGGGGAGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTGAGGGAGTCTCTCAAAGAAATGAACGGCGGCGGCGGTGAGGGATTCGCCGAGGACGGCGGGTCTCCGGTGGTGGCGTTGAAAAGAAAACATTCGATTAGAAGGAAAGCCATCAGCAAAAAGAGCAAAGAAAGAGATGTGAGGATCCAAAATATGGTGGTTTTGGAGGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCTCTTCTCAAAGTGGTAGCCCTTGTTCTTTTTGA 675 51.11 MDYSGFFSSASDFSSESSFGSPEPSFLNLDHNFLPFNENDSEEMLLYGLISEGTHESLEMGIGTVRVKEEEVDSVGEESPKKEKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNGGGGEGFAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNMVVLEDLGAEYLEELLGSSQSGSPCSF 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5627998 5629198 - Tan0017403.1 Tan10g0689 765483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0689 224 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0689 224 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677(InterPro)
Tan10g0689 224 Pfam AP2 domain 85 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0689 224 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Tan10g0689 224 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0689 224 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0689 224 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0689 224 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0689 224 PANTHER DNA-BINDING DOMAIN 46 182 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Tan10g0689 224 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1882 Tan-Chr7:70388393 Tan10g0689 Tan-Chr10:5627998 2.40E-24 dispersed
Tan10g0689 Tan-Chr10:5627998 Tan10g0691 Tan-Chr10:5681394 1.20E-19 dispersed
Tan10g0689 Tan-Chr10:5627998 Tan10g0690 Tan-Chr10:5663258 2.80E-16 tandem
Tan10g0689 Tan-Chr10:5627998 Tan06g2418 Tan-Chr6:76662959 2.00E-67 wgd
Tan10g0689 Tan-Chr10:5627998 Tan07g2222 Tan-Chr7:73655817 2.40E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28518 PF00847 AP2 2.10E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0689 K14516 - csv:101210326 336.65