Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0717 ATGAATCAAATAATTTATTTTGTTTGGTTTCTGGCGAATCCTTGGTGGACCACTCAGGTGGGGTTGCCGGGAGTGGATCATCACCACCCGGCGGCGGTCAACTCACCAATCTTCAAACAAAGTGATGAAAACAGCGGCGGAGGAAGCGGCAGCCGGGATGATGATGATGACGACAACCGCGACGAGCCGAAAGAAGGCGCCGTCGAGGCCGGAACTCGGAGGCCAAGAGGCCGTCCGCCTGGATCTAAAAACAAACCAAAACCACCCATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTTCTAGAGGTCGCCGCCGGATCCGACGTGGCGGATTCAATCGCCCAATTCGCCCGGAAGCGCCAGCGTGGCGTATGCGTCCTCAGTGCAACCGGCTTGGTCGCCAACGTCACCTTACGTCAGCCCGCCGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTCGAGATTCTCTCTTTAACCGGCGCGTTTTTACCCGGCCCGGCCCCTCCCGGATCCACCGGGCTGACCGTTTACTTGTCCGGCGGTCAGGGGCAGGTCGTCGGCGGAAGCGTTGTTGGGTCGCTTGTAGCGGCCGGTCCTATTATGGTAATTGCTGCCACGTTTGCTAATGCGACTTATGAAAGGCTGCCTCTTGAAGATCCCGAGGACCATGAAGTTGGCAGTGGCTCCGCCTCACACGGCGGCGCTAGAAGCCCACCGCCGGAAATTAGAGCTACTGGTGCAGGGCAGATGCCGACTGGGATGCCGGAACCAACTTTGCCGTTGTATAATTTACTGCCGGATATGATGCCCAACGGCGTTCAGCTTAGCCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA 879 58.13 MNQIIYFVWFLANPWWTTQVGLPGVDHHHPAAVNSPIFKQSDENSGGGSGSRDDDDDDNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPEDHEVGSGSASHGGARSPPPEIRATGAGQMPTGMPEPTLPLYNLLPDMMPNGVQLSHDGYAYVRPPY 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5902568 5903921 + Tan0012620.1 Tan10g0717 765511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0717 292 ProSiteProfiles PPC domain profile profile. 97 238 IPR005175 -
Tan10g0717 292 MobiDBLite consensus disorder prediction 224 261 - -
Tan10g0717 292 Gene3D - 100 229 - -
Tan10g0717 292 MobiDBLite consensus disorder prediction 37 94 - -
Tan10g0717 292 FunFam AT-hook motif nuclear-localized protein 100 228 - -
Tan10g0717 292 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 285 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan10g0717 292 CDD DUF296 101 183 IPR005175 -
Tan10g0717 292 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 225 - -
Tan10g0717 292 PIRSF ESCAROLA 19 291 IPR014476 GO:0003680(InterPro)
Tan10g0717 292 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0265 Tan-Chr4:2102119 Tan10g0717 Tan-Chr10:5902568 1.20E-63 dispersed
Tan04g0266 Tan-Chr4:2102119 Tan10g0717 Tan-Chr10:5902568 1.20E-63 dispersed
Tan09g0758 Tan-Chr9:57890886 Tan10g0717 Tan-Chr10:5902568 1.20E-34 dispersed
Tan10g0419 Tan-Chr10:3375213 Tan10g0717 Tan-Chr10:5902568 1.00E-57 dispersed
Tan10g0717 Tan-Chr10:5902568 Tan11g0207 Tan-Chr11:1733777 3.30E-54 dispersed
Tan10g0717 Tan-Chr10:5902568 Tan06g2437 Tan-Chr6:76823675 3.80E-66 wgd
Tan10g0717 Tan-Chr10:5902568 Tan08g0388 Tan-Chr8:3505718 6.00E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0717 - - - 0.0