Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0778 ATGGCGTCCATGGCGACTCGTTTCACCAAAACCCCATCCCCATTTCATTCTATCCAGAAAACTTCCCACACCCATTTTGGCGCTCCGATCCAAATCTCCATTGCTGGGAGCTCCAAGGCGAAGAGGACCCATCTCCGGCTCCAGGTTTCCGCCGGTTTGATCGAACCGGACGGCGGAAGGCTGGTGGGGCTTTTGGTTGAGGAGCCTCTGAGGCGTTTGAAGAAGAAGGAGTCCTTGTCCTTGCCGAGGATCGAGCTTTCGAGCATCGATATTCAATGGGTTCATGTGCTCAGCGAAGGATGGGCCAGTCCTCTTACCGGATTCATGAGAGAATCCGAGTTCCTCCAAACGCTTCATTTCAATTCGCTCAGGCTTCCAGATGGGTCTGTGGCGAACATGTCAGTGCCCATTGTTCTGGCCATTGACGATGCCCAAAAGCACCGCATCGGCGACTCCACCAGTGTGGCTCTCTTTGACGCCAAGAACAACCCCATCGCTATTCTGAAGGATATTGAGATCTACAAGCACCCTAAAGAAGAAAGGATAGCAAGAACCTGGGGCACCACTGCCCCCGGGCTCCCTTATGTTGATCAAGCTATAACCAATGCTGGCAATTGGCTGATAGGAGGTGACTTAGAGGTTATAGAGCCAATCAAGTACCATGATGGCCTTGACCGTTTCCGACAGTCACCTGCAGAACTACGGGAGGAATTTACTCGGCGAAATGCAGATGCAGTGTTTGCATTCCAACTTCGAAACCCAGTACATAATGGGCACGCATTACTAATGACTGATACCCGCCGTCGACTGCTCGAAATGGGGTACAAGAACCCCATTTTGTTGCTTCATCCTTTGGGTGGCTACACCAAGGCAGATGATGTTCCACTTAGTTGGCGCATGAAGCAACATGAGAAGGTACTCGAGGATGGTGTTCTTGATCCAGAGACAACGGTCGTCTCGATATTTCCATCTCCAATGCACTATGCAGGGCCAACTGAGGTGCAGTGGCATGCAAAGGCAAGAATCAATGCAGGAGCCAACTTTTACATTGTTGGACGTGACCCAGCTGGAATGGGTCATCCTACTGAGAAAAGGGATTTGTATGATGCTGACCATGGGAAGAAAGTTTTGAGCATGGCACCTGGACTAGAGCGGCTAAACATCCTTCCTTTCAGAGTTGCTGCGTATGATAAAACTAAGGGCAAGATGGCCTTCTTCGACCCCTCAAGAGCTCAGGATTTCCTTTTCATATCCGGCACCAAGATGAGAACACTAGCAAAGAATAAGGAGAATCCACCTGAAGGGTTTATGTGCCCAGGTGGATGGAAGGTGTTAGTTGAATATTATGATAGTTTGGTACCTGCAAGCAATGACAGACTTCCTGAACCTGAAGCTGTTCTGGCATAG 1407 49.82 MASMATRFTKTPSPFHSIQKTSHTHFGAPIQISIAGSSKAKRTHLRLQVSAGLIEPDGGRLVGLLVEEPLRRLKKKESLSLPRIELSSIDIQWVHVLSEGWASPLTGFMRESEFLQTLHFNSLRLPDGSVANMSVPIVLAIDDAQKHRIGDSTSVALFDAKNNPIAILKDIEIYKHPKEERIARTWGTTAPGLPYVDQAITNAGNWLIGGDLEVIEPIKYHDGLDRFRQSPAELREEFTRRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPILLLHPLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTKGKMAFFDPSRAQDFLFISGTKMRTLAKNKENPPEGFMCPGGWKVLVEYYDSLVPASNDRLPEPEAVLA 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6445600 6448998 - Tan0018876.1 Tan10g0778 765572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0778 468 Pfam PUA-like domain 54 216 IPR025980 -
Tan10g0778 468 Pfam ATP-sulfurylase 226 448 IPR024951 GO:0004781(InterPro)
Tan10g0778 468 FunFam bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 221 454 - -
Tan10g0778 468 NCBIfam sulfate adenylyltransferase 56 447 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Tan10g0778 468 SUPERFAMILY PUA domain-like 54 222 IPR015947 -
Tan10g0778 468 SUPERFAMILY Nucleotidylyl transferase 226 449 - -
Tan10g0778 468 Gene3D Sulfate adenylyltransferase 52 220 - -
Tan10g0778 468 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 55 441 - GO:0000103(PANTHER)|GO:0004020(PANTHER)
Tan10g0778 468 CDD ATPS 81 448 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Tan10g0778 468 Gene3D HUPs 221 455 IPR014729 -
Tan10g0778 468 FunFam ATP sulfurylase 2 52 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0778 K13811 - - csv:101221111 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5005 Tan-Chr1:115772522 Tan10g0778 Tan-Chr10:6445600 6.50E-188 dispersed
Tan06g2281 Tan-Chr6:73793170 Tan10g0778 Tan-Chr10:6445600 1.40E-09 transposed
Tan10g0778 Tan-Chr10:6445600 Tan06g2478 Tan-Chr6:77470081 3.40E-226 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g568 . . Bda03g00863 . . Bpe14g01215 . . . Cmo17g00197 Cma06g01361 Cma14g01757 Car06g01178 Car14g01581 Sed02g1352 Cpe08g00293 Cpe03g01475 Bhi01g00748 Tan10g0778 Cmetu05g1198 Lac12g2245 Hepe05g1594 . Lcy11g1590 Cla06g00616 Cam06g0654 Cec06g0658 Cco06g0663 Clacu06g0641 Cmu06g0635 Cre06g1402 . . Cone7ag0284 Cone4ag0277 . Csa02g01120 Chy05g00377 Cme06g00566 Blo02g00593 Blo07g00236 Bda11g00602 Bda13g00099 . Bpe13g00583 . Bma06g01575 . Cmo06g01374 Cmo14g01798 . Cma17g00202 . Car17g00179 Cpe12g00173 . Bhi12g02244 . . . . . Lcy13g0315 Cla05g00501 Cam05g0551 Cec05g0564 Cco05g0562 Clacu05g0548 Cmu05g0520 Cre05g0588 Lsi09g01290 Csa03g01282 Chy06g00534 Cme05g00494
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93