Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0783 ATGCAGCTTCTTAACTCTGAAGAAACGGTCGCCGACTCCTCGGAAAGCGGCCTTGTGGAGGCAAGAAATTTGAAATCTTCTAAGTTTGAAGATGATAATGGAAACGATGCAGATGATTCGGTTCTTGATGTCTCGGGGAGAAACTTGGATTCCCACTTCTTGGAGGGTTCCAACAGCTCAGTGAAGGGTCTGTACATATTTCGGAATGTGTTCAATTTGATCCCGAAATCAGTTGGCGACTTCAGAGAAATGAGAATGCTGAAGTTCTTCGGAAACGAGATTAATTTATTTCCCCCGGAGTTGAAGAACTTTGTGGGGTTAGAATGCTTGCAGGTGAAGTTATCATCACCGGGTTTTGGTGGTTTATCATTACACAAACTGAAGGGTCTGAAGGAGCTCGAGCTATCGAAGATTCCTCCTAAACCTTCCTCGTTTCCAATTCTTAGTGAGATCGCTGACCTTAAGTGCCTGACTAAGCTCACTGTTTGTCACTTTTCTATTAGATTTCTTCCTCCTGAAATTGGCTGCCTGAATAGTTTGGAGTATCTAGATCTCTCATTTAATAAGATGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATGCCTTGATATCCTTGAGAGTTGCCAATAATAAATTGGTGGAACTACCTGCAGCTCTGTCCTCCCTGCAAAAGTTGGAGAACTTGGATCTATCAAGTAATAGGTTAACATCATTGGGGTCTCTTGAACTTGTATCCATGCATAGCCTTAAAAACTTAAATTTACAGTACAATAAATTTCTAAGAAGCTGTCAGATACCCTCTTGGATATGCTGCAATTTTGAAGGAAATTGTGGAGACGATACAGCTAATGAAGAATGTATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCATTCCAAACAATAGTGATAATTTTCCCCATAAAGGTACTCGTAATCTCTCATCAAACCTATTGATGGGATCTTCAACGAATTGTAGAACCTTTGCATCTCGAAGATCAGGTAAGCGATGGCGGAGACGACATTATTTACAGCAGAAAGCTCGCCAGGAACGTTTGAATAGCAGCAGGAAGTGGAAAGGGGTAGATCATCATACTGAGGTGAAGATCCATGAAAATCATGAACTTGGGAGGCTTGATACTATCCCTACTTCTAAAACGACAGTTGAAGATTCATCAGTTATTGAGGAGTTATATGATAGTAAAGAAACCTGTCATGGAGAAGCTGAAAGGGAAAATCTTATCGAGAGCCATGAGAATGACAATTTTGATCTCAAAAAGGAACTTTCTGTGGAGGATAGCTCAAGTATCTGTGTTAGTGCTGCAGAAACAATGACAAGGGACAAAGATGAATGTTGTGAGCCCAGTGAGGCTTTGCTGCCAACAGGAAATGGAGCACATGACCTAGAAGGGTCATCTTCCCAAATATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGGCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAATATTTCATTTTGCAGCGTTGAAGATCATCTACCTGATGGATTTTACGATGCAGGGCGTGATCGTCCCTTCATCCCGTTAAGGAATTATGAGCAAAATTTCCATCTTGATTCACGTGAAGTCATTCTTGTCAACAGGGAACACGATGAATTATTAGACTCTACAGTAATATCTGCCAAGTCATTGGTGCTCCGTCTAAAGCAGATTAACCAAACCCAAGAAAGACATCAAGTTCTTGATGACGTGCATATTGCACAAGTACTTGCTTTATTTGTATCCGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCAAAGTATCAGAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGAATAATCTTACTGTGCCCACCAAATTAACGGTGGATAATTATGAGGATATTCTTTTTACTGATATCTGTGAGAAATCTCTTCGTGCCATTAAAGCTAGTCGAAATTCCATCATAGTTCCCCTAGGAGCTCTGCAGTTTGGTGTGTGCAGACATAGAGCAGTGCTTCTTAAGTATTTGTGTGACCGTATGGAGCCTCGGGTACCTTGCGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAACGTGATCTTAGTGAAAAGAGGTGATGCTTCGGTTCGGATGGTTGTTGATGCATGTCGACCGAATGATATACGAGAAGAAGCAGATCCCGAGTATTTTTGCAGGTATATTCCTCTCAGTCGTGCCAAAATTCCTATTTCTTTTGGAATGACACCCAGTCCAGGCTTCTCTTTTCCGTCTCTTTCCAATTGTGATGAGATTGAGAAGGCACCTTCTAGTTCTGTGATAAAGTGCAAACTTGGGTCAGTTGAGGCTGCAGCAAAGGTACGGACGCTTGAAGTCTGTGAATCTTCATTTGATGAGATAAGGAACTTTGAATACCGTTGCTTAGGTGAAGTTAGAATACTGGGTGCTTTGAAACACTCCTGCATTGTACAGATGTATGGACATCAGATTTCTTCTGAATGGGTTCCTTCTGAGGATGGAAAACCAAAGCATCGGTTACTTAGGTCTGCTATTTTTTTAGAGCATGTTAAAGGGGGATCTTTGAAGAGCTACATGGACAAGTTGTACCAAGCTGGGAAAAAAAACATTCCAATCGATCTAGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGTGACATCAAAAGTGAAAATATTTTGATAGATTTTGATGAGACATCCGATGGAGTTCCCATCATTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTTATTGCACACTTGTTGCATTTCTCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTACGAGCGATGCATACACCAAGTGTTTATGGACTGGTATGTAGATTGCCTTTTCATTTTTTATCGTTGATGTTTCAGGCTTAG 3075 41.17 MQLLNSEETVADSSESGLVEARNLKSSKFEDDNGNDADDSVLDVSGRNLDSHFLEGSNSSVKGLYIFRNVFNLIPKSVGDFREMRMLKFFGNEINLFPPELKNFVGLECLQVKLSSPGFGGLSLHKLKGLKELELSKIPPKPSSFPILSEIADLKCLTKLTVCHFSIRFLPPEIGCLNSLEYLDLSFNKMKSLPAEIGYLNALISLRVANNKLVELPAALSSLQKLENLDLSSNRLTSLGSLELVSMHSLKNLNLQYNKFLRSCQIPSWICCNFEGNCGDDTANEECISSTVEMDVYEATIPNNSDNFPHKGTRNLSSNLLMGSSTNCRTFASRRSGKRWRRRHYLQQKARQERLNSSRKWKGVDHHTEVKIHENHELGRLDTIPTSKTTVEDSSVIEELYDSKETCHGEAERENLIESHENDNFDLKKELSVEDSSSICVSAAETMTRDKDECCEPSEALLPTGNGAHDLEGSSSQISKDNAKLKRYSERELDNPKPCKSRKAAEDSSSLSCKYNNISFCSVEDHLPDGFYDAGRDRPFIPLRNYEQNFHLDSREVILVNREHDELLDSTVISAKSLVLRLKQINQTQERHQVLDDVHIAQVLALFVSDHFGGSDRSAMVEKTRKAVSGSKYQKPFVCTCSTGDRNNLTVPTKLTVDNYEDILFTDICEKSLRAIKASRNSIIVPLGALQFGVCRHRAVLLKYLCDRMEPRVPCELVRGYLDFLPHAWNVILVKRGDASVRMVVDACRPNDIREEADPEYFCRYIPLSRAKIPISFGMTPSPGFSFPSLSNCDEIEKAPSSSVIKCKLGSVEAAAKVRTLEVCESSFDEIRNFEYRCLGEVRILGALKHSCIVQMYGHQISSEWVPSEDGKPKHRLLRSAIFLEHVKGGSLKSYMDKLYQAGKKNIPIDLALHVARDVASALVELHSKHIIHRDIKSENILIDFDETSDGVPIIKLCDFDRAVPLRSLLHTCCISHTGIPPPDVCVGTPRWMAPEVLRAMHTPSVYGLVCRLPFHFLSLMFQA 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6510265 6515859 - Tan0009535.2 Tan10g0783 765577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0783 1024 FunFam Leucine-rich repeat protein kinase family protein 836 1023 - -
Tan10g0783 1024 MobiDBLite consensus disorder prediction 458 483 - -
Tan10g0783 1024 SMART LRR_typ_2 177 198 IPR003591 -
Tan10g0783 1024 SMART LRR_typ_2 200 222 IPR003591 -
Tan10g0783 1024 SMART LRR_typ_2 223 246 IPR003591 -
Tan10g0783 1024 SMART LRR_bac_2 177 196 - -
Tan10g0783 1024 SMART LRR_bac_2 200 219 - -
Tan10g0783 1024 SMART LRR_bac_2 223 242 - -
Tan10g0783 1024 PRINTS Leucine-rich repeat signature 223 236 - -
Tan10g0783 1024 PRINTS Leucine-rich repeat signature 180 193 - -
Tan10g0783 1024 ProSiteProfiles Protein kinase domain profile. 790 1024 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0783 1024 Pfam Ethylene-responsive protein kinase Le-CTR1 669 746 - -
Tan10g0783 1024 ProSiteProfiles Leucine-rich repeat profile. 179 200 IPR001611 GO:0005515(InterPro)
Tan10g0783 1024 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 196 1009 - GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Tan10g0783 1024 Pfam Protein kinase domain 829 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0783 1024 FunFam At1g04210 115 301 - -
Tan10g0783 1024 Gene3D Transferase(Phosphotransferase) domain 1 796 1007 - -
Tan10g0783 1024 ProSiteProfiles Leucine-rich repeat profile. 225 246 IPR001611 GO:0005515(InterPro)
Tan10g0783 1024 Gene3D Ribonuclease Inhibitor 19 287 IPR032675 -
Tan10g0783 1024 SUPERFAMILY RNI-like 53 264 - -
Tan10g0783 1024 SMART serkin_6 790 1024 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0783 1024 SUPERFAMILY Protein kinase-like (PK-like) 803 1001 IPR011009 -
Tan10g0783 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 931 943 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0783 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0783 Tan-Chr10:6510265 Tan05g2017 Tan-Chr5:70162549 1.30E-12 dispersed
Tan10g0782 Tan-Chr10:6507989 Tan10g0783 Tan-Chr10:6510265 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68128 PF00069 Pkinase 1.60E-22 CL0016 Tan PK