Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0798 ATGAAAACCTCAAACTTCCTTCTCCCAAAATCTCTCCTCATCATCTCCATTCTCATCCTCCTCCCTAAACCTTCCCTTCAAGCATCTCGGCCGCCATCGCCGTCACCGTCACCACCACCGTCATTTCTCCCGAACCCGAGACTCCTCAAGGCCTACACCGCTCTCCAAGCTTGGAAACACGCCATCACCGCTGACCCGACCAACTTCACCGCCGACTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGATGACCCCTACATTCTCACTGTCGCCGGGATCGACCTCAACCATGCCAACCTCTCGGGCACCCTGCCCGATGACCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAACTCCAATCGCTTCTGTGGCACCATCCCTAACTCCTTCCGGTGCCTCACTCTCCTCTTTGAGCTTGATCTCAGCAACAATGACTTCTCAGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCATCTCTCAAATTCCTCGACATTCGATTCAACAAATTCCATGGCGATCTCCCTTCCCCCCTGTTTGACATGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTCTCCCTGCCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTCGTTTTTGCTAATAATAACATCAATGGATGCCTCCCCTCGAGTTTGTCGAAAATGAACAGAACACTCAATGAAATTATAATCACGAATAGTGGGTTGAATGGGTGTTTACCGCCGGAAATTGGATCGTTAAGCAATCTCACCGTCTTTGATGTCAGTGACAACAATCTCTTCGGGCCGTTGCCTGAGACGATGACCGGAATGAAGAAATTGGAACAGTTAAACGTCGCACACAACCAATTATCCGGCGAGATTCCGGCGAGTATCTGCTCGTTGCCGAAATTGCAGAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGTCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCGGAAAAATTGCTTGCCAGAAAGGCCATTGCAACGTTCGCCGGAGGAATGTAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGCTGTACTCGTCGGCCGCCACCGCCGCCTCCGCCTCCACCTCCACCTCCACCACCACCGCCGCCGCCATATTATTAG 1182 52.03 MKTSNFLLPKSLLIISILILLPKPSLQASRPPSPSPSPPPSFLPNPRLLKAYTALQAWKHAITADPTNFTADWYGPNVCNYSGVFCAPAPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDLSNNDFSGEFPSVILSLPSLKFLDIRFNKFHGDLPSPLFDMKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSKMNRTLNEIIITNSGLNGCLPPEIGSLSNLTVFDVSDNNLFGPLPETMTGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPSVCLKLQASDDRKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPPPPPPPPPPPPPYY 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6686244 6687560 + Tan0007036.1 Tan10g0798 765592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0798 393 Pfam Leucine rich repeat N-terminal domain 53 86 IPR013210 -
Tan10g0798 393 Gene3D Ribonuclease Inhibitor 50 212 IPR032675 -
Tan10g0798 393 SUPERFAMILY L domain-like 51 332 - -
Tan10g0798 393 Gene3D Ribonuclease Inhibitor 213 334 IPR032675 -
Tan10g0798 393 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 40 389 IPR051582 -
Tan10g0798 393 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Tan10g0798 393 Pfam Leucine Rich Repeat 169 189 IPR001611 GO:0005515(InterPro)
Tan10g0798 393 Pfam Leucine Rich Repeat 264 285 IPR001611 GO:0005515(InterPro)
Tan10g0798 393 Pfam Leucine Rich Repeat 146 166 IPR001611 GO:0005515(InterPro)
Tan10g0798 393 FunFam Leucine-rich repeat extensin-like protein 1 52 213 - -
Tan10g0798 393 MobiDBLite consensus disorder prediction 372 393 - -
Tan10g0798 393 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0208 Tan-Chr2:1755214 Tan10g0798 Tan-Chr10:6686244 8.50E-43 dispersed
Tan08g0179 Tan-Chr8:1557380 Tan10g0798 Tan-Chr10:6686244 1.00E-30 dispersed
Tan09g1193 Tan-Chr9:64274014 Tan10g0798 Tan-Chr10:6686244 5.90E-28 dispersed
Tan10g0798 Tan-Chr10:6686244 Tan09g1311 Tan-Chr9:65422738 8.30E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0798 - - - 0.0