Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0877 ATGGCGGGCTCTGTCGTCCAATCTAGTCGATCGAGGGACCTCGACAAGCTCCTCCTCAGGCCCGGTAACCTCATCGGCGCCAATTTCGAGCCCGGTTCCCAATTGAGGGATGACCTTCAACAGTACGTGAAAGTGTTGGTCATAGGAGCTGGAGGGTTGGGCTGTGAGCTCCTGAAGGACTTGGCTTTGTCGGGTTTTCGGAATCTGGAAGTCATTGACATGGATCGCATCGAAGTTACTAATCTCAACCGTCAGTTTCTCTTCAGGCTTGAAGATGTTGGTAAGCCAAAAGCTGAGGTGGCTGCAAAACGTGTTATGGAGAGAGTTACCGGTGTCAATATTGTGCCACATTTTTGCCGGATCGAGGACAAAGAAATTGAATTTTACAATGATTTTCACATAATTGCACTTGGGCTTGATTCTATTGAAGCTCGAAGTTACATCAATGCTGTAGCTTGTAGCTTCCTTGAGTATGATTCTGATGATAATCCATTAGAAGAAACAATTAAACCAATGGTAGATGGTGGAACAGAAGGCTTTAAGGGCCATGCCAGGGTGATTTTACCAGGGGTCACACCATGCTTCGAGTGTACCATCTGGCTTTTTCCACCTCAAGTAAAGTTTCCCTTATGTACTCTAGCAGAAACTCCTAGAACTGCTGCTCATTGTATCGAGTATGCACACCTAATTAAATGGGATGAGGTTCATAGCGGAAAAGCTTTCGATCCAGATGATTCCGAACATATGAAATGGGTTTACAATGAGGCTGTTAAGAGAGCTGAGCTTTTTGGCATTCCGGGAGTCACGTATTCACTAACTCAGGGTGTTGTGAAGAATATCATACCTGCTATTGCTTCCACCAATGCAATTATATCAGCTGCATGTGCACTGGAAACATTGAAGATTGTATCAGGATGCAGCAAAACTCTATCCAACTACTTAACATATAATGGTGCAGAAGGTCTCCACACTAAAGTGACCGAGTTTGTAAAAGATAAGGACTGTCTTGTTTGTGGTCCAGGTGTTCTTATTGAGCTGGATTCTACTATTACTTTACAAAAGTTCATTGACCTGCTAGAAGATCATCCCAAGCTCTTGTTATCAAAGGCAAGTGTCACGCATCGAGGGAAGAATCTATACATGCAGGCACCTCCTGTACTTGAAGAGATGACCAGATCAAATTTGAGTGTTCCACTTTTTGACTTGATGGGTAAAGTTTTGAAAGATGTAGTCCATGTTACTGGTGTAACTTCTCAGAATGATAAGAAAACTTCCTGTCTCAGAAAATTACGTGTGGCTTTTAAGGCGGTTGACGGTGTTACAGATATGGACACTGCAGGTGGGGCTTAA 1350 43.56 MAGSVVQSSRSRDLDKLLLRPGNLIGANFEPGSQLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVTGVNIVPHFCRIEDKEIEFYNDFHIIALGLDSIEARSYINAVACSFLEYDSDDNPLEETIKPMVDGGTEGFKGHARVILPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKAFDPDDSEHMKWVYNEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSGCSKTLSNYLTYNGAEGLHTKVTEFVKDKDCLVCGPGVLIELDSTITLQKFIDLLEDHPKLLLSKASVTHRGKNLYMQAPPVLEEMTRSNLSVPLFDLMGKVLKDVVHVTGVTSQNDKKTSCLRKLRVAFKAVDGVTDMDTAGGA 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7342231 7346787 - Tan0018724.1 Tan10g0877 765671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0877 449 ProSitePatterns Ubiquitin-activating enzyme active site. 209 217 IPR033127 -
Tan10g0877 449 Gene3D - 41 342 - -
Tan10g0877 449 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 44 415 IPR035985 GO:0008641(InterPro)
Tan10g0877 449 CDD Uba3_RUB 44 339 IPR030468 -
Tan10g0877 449 FunFam SUMO-activating enzyme subunit 2 31 136 - -
Tan10g0877 449 Pfam E2 binding domain 345 432 IPR014929 GO:0019781(InterPro)|GO:0045116(InterPro)
Tan10g0877 449 Pfam ThiF family 36 336 IPR000594 -
Tan10g0877 449 Gene3D - 343 430 - -
Tan10g0877 449 SMART E2_bind_2 344 435 IPR014929 GO:0019781(InterPro)|GO:0045116(InterPro)
Tan10g0877 449 FunFam NEDD8-activating enzyme E1 catalytic subunit 343 425 - -
Tan10g0877 449 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 211 279 IPR023318 -
Tan10g0877 449 FunFam NEDD8-activating enzyme E1 catalytic subunit 208 280 - -
Tan10g0877 449 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 41 408 IPR045886 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0019781(PANTHER)|GO:0032446(PANTHER)|GO:0045116(PANTHER)
Tan10g0877 449 FunFam NEDD8-activating enzyme E1 catalytic subunit 42 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0877 K10686 - - csv:101209336 867.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1263 Tan-Chr5:13741849 Tan10g0877 Tan-Chr10:7342231 3.80E-34 dispersed
Tan05g1264 Tan-Chr5:13741849 Tan10g0877 Tan-Chr10:7342231 3.90E-34 dispersed
Tan10g0877 Tan-Chr10:7342231 Tan10g0879 Tan-Chr10:7342231 5.80E-183 dispersed
Tan10g0877 Tan-Chr10:7342231 Tan10g0878 Tan-Chr10:7342231 2.60E-207 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g445 . . . . . Bpe14g01316 . . . . . Cma14g01683 . Car14g01517 Sed02g1264 . Cpe03g01420 Bhi01g00848 Tan10g0877 Cmetu06g2420 . Hepe05g1528 . Lcy11g1514 . . . . . . . Cone14ag0828 . . . Lsi05g01447 . . Cme06g00634 . . . . . . Bma02g00690 . . Cmo06g01432 Cmo14g01729 . . . . . . . . . . . . . Cla05g00570 Cam05g0626 Cec05g0637 Cco05g0632 Clacu05g0622 Cmu05g0590 Cre05g0659 . Csa03g01360 Chy06g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008479 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 35