Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0885 ATGGCTCATATTGCTGTCGAGAGAAATAGGAGAAGGCAAATGAATGAACATCTTAGGGTTTTGAGATCTTTGACTCCTTGTTTCTATATCAAAAGGGGAGATCAAGCCTCCATTATTGGAGGAGTGATTGAGTTCATCAAGGAGTTGCATCAGGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTAAGCCCTAGTCCTGGTTGTTGTTGTAACTCGTCGGTCGCGGATGTCGAAGCGAAGATTTCGGGTTCGAACGTGCTATTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTCTTGGAGAGGCTTTCCTTCGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACTGTTCTGTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGAGGAATTAGCTTTTGAAGTTCAACAAAGCTTCTGCTCTCAAATTTACTTATGCCAGTGA 495 42.83 MAHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPGCCCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAFEVQQSFCSQIYLCQ 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7421692 7423535 + Tan0007521.1 Tan10g0885 765679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0885 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Tan10g0885 164 Gene3D - 1 65 IPR036638 GO:0046983(InterPro)
Tan10g0885 164 PANTHER TRANSCRIPTION FACTOR FAMA 1 70 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Tan10g0885 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 63 IPR036638 GO:0046983(InterPro)
Tan10g0885 164 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Tan10g0885 164 FunFam Transcription factor MUTE 1 67 - -
Tan10g0885 164 Pfam Helix-loop-helix DNA-binding domain 1 50 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0149 Tan-Chr1:1380483 Tan10g0885 Tan-Chr10:7421692 3.30E-38 dispersed
Tan10g0526 Tan-Chr10:4203530 Tan10g0885 Tan-Chr10:7421692 8.70E-37 dispersed
Tan10g0885 Tan-Chr10:7421692 Tan10g0525 Tan-Chr10:4203530 3.00E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28536 PF00010 HLH 7.70E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0885 - - - 0.0