Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0888 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTATCTTCAAAACCCACCTCCGCCTCCTCCTCCGCCTTACCTTTCTTCTTCCTCTTTCTATTACCCTTCTGAACCCCCATCCCTTTCTCCGCCGCCACCTCCGCCACCACCGCCGCCGACCCATCAGTTCACCAATTCCCACTCTCCTCGCCTGCACAGCCGCCCTTACGTTCCAACTCCTCAGCCTCTGCCTCTGCCTCCGATTCCTCCTCCTCCTGCCCCTGCTCCTCACTCCTACTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCAATGGGGCGTTTCAATTTCCACCCTTATTATGCCAATCAAAGTAATGGGTGGTCCCAAATTCGGCCGGCGATGGGGCCGCCGTTGCTTCCGCCACCGCCTCTGCCGTTTGTGGAGCATCGGCAGGCGAAGAAGGTTAGAAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGACGAGCAGAACCCTGATCATCACTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCATAACGATTCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGATTTGTTCCAGTATATCCCGATGCCTTCAAGCCAGTAAAAATCCCATTTCAGAAGGGTCCTGGCCAGAAATTCTTTCAGCCTGAGGGAACTGGCTTTGACTTGGGATTTTTTGAGTTGGATGACCTCTCAAAACCTTCACCTGTCGAAGACGTTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAGTCCAATGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAGTCCTTTCCAAGTTAGAGTGATTAGGCAGCTACTCTGGATTGATGGAGTGCGATATGAGTTGCGAGAGATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA 1182 47.46 MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPPSLSPPPPPPPPPPTHQFTNSHSPRLHSRPYVPTPQPLPLPPIPPPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPGQKFFQPEGTGFDLGFFELDDLSKPSPVEDVFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGSPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7456193 7461261 - Tan0003983.2 Tan10g0888 765682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0888 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Tan10g0888 393 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Tan10g0888 393 MobiDBLite consensus disorder prediction 67 82 - -
Tan10g0888 393 PANTHER MAHOGUNIN 1 391 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Tan10g0888 393 SUPERFAMILY RING/U-box 337 383 - -
Tan10g0888 393 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Tan10g0888 393 MobiDBLite consensus disorder prediction 1 82 - -
Tan10g0888 393 SMART ring_2 338 376 IPR001841 -
Tan10g0888 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Tan10g0888 393 MobiDBLite consensus disorder prediction 36 55 - -
Tan10g0888 393 MobiDBLite consensus disorder prediction 14 28 - -
Tan10g0888 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0888 Tan-Chr10:7456193 Tan11g1945 Tan-Chr11:30635983 9.20E-07 dispersed
Tan10g0887 Tan-Chr10:7456193 Tan10g0888 Tan-Chr10:7456193 9.90E-195 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0888 K27504 - csv:101203938 653.669