Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g0888 | ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTATCTTCAAAACCCACCTCCGCCTCCTCCTCCGCCTTACCTTTCTTCTTCCTCTTTCTATTACCCTTCTGAACCCCCATCCCTTTCTCCGCCGCCACCTCCGCCACCACCGCCGCCGACCCATCAGTTCACCAATTCCCACTCTCCTCGCCTGCACAGCCGCCCTTACGTTCCAACTCCTCAGCCTCTGCCTCTGCCTCCGATTCCTCCTCCTCCTGCCCCTGCTCCTCACTCCTACTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCAATGGGGCGTTTCAATTTCCACCCTTATTATGCCAATCAAAGTAATGGGTGGTCCCAAATTCGGCCGGCGATGGGGCCGCCGTTGCTTCCGCCACCGCCTCTGCCGTTTGTGGAGCATCGGCAGGCGAAGAAGGTTAGAAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGACGAGCAGAACCCTGATCATCACTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCATAACGATTCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGATTTGTTCCAGTATATCCCGATGCCTTCAAGCCAGTAAAAATCCCATTTCAGAAGGGTCCTGGCCAGAAATTCTTTCAGCCTGAGGGAACTGGCTTTGACTTGGGATTTTTTGAGTTGGATGACCTCTCAAAACCTTCACCTGTCGAAGACGTTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAGTCCAATGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAGTCCTTTCCAAGTTAGAGTGATTAGGCAGCTACTCTGGATTGATGGAGTGCGATATGAGTTGCGAGAGATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA | 1182 | 47.46 | MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPPSLSPPPPPPPPPPTHQFTNSHSPRLHSRPYVPTPQPLPLPPIPPPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPGQKFFQPEGTGFDLGFFELDDLSKPSPVEDVFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGSPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ | 393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 7456193 | 7461261 | - | Tan0003983.2 | Tan10g0888 | 765682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g0888 | 393 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 387 | IPR013083 | - | |
Tan10g0888 | 393 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 322 | 387 | - | - | |
Tan10g0888 | 393 | MobiDBLite | consensus disorder prediction | 67 | 82 | - | - | |
Tan10g0888 | 393 | PANTHER | MAHOGUNIN | 1 | 391 | IPR045194 | GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro) | |
Tan10g0888 | 393 | SUPERFAMILY | RING/U-box | 337 | 383 | - | - | |
Tan10g0888 | 393 | CDD | mRING-HC-C3HC5_MGRN1-like | 336 | 377 | IPR045195 | - | |
Tan10g0888 | 393 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
Tan10g0888 | 393 | SMART | ring_2 | 338 | 376 | IPR001841 | - | |
Tan10g0888 | 393 | Pfam | Zinc finger, C3HC4 type (RING finger) | 336 | 382 | - | - | |
Tan10g0888 | 393 | MobiDBLite | consensus disorder prediction | 36 | 55 | - | - | |
Tan10g0888 | 393 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - | |
Tan10g0888 | 393 | ProSiteProfiles | Zinc finger RING-type profile. | 338 | 377 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan10g0888 | Tan-Chr10:7456193 | Tan11g1945 | Tan-Chr11:30635983 | 9.20E-07 | dispersed | |
Tan10g0887 | Tan-Chr10:7456193 | Tan10g0888 | Tan-Chr10:7456193 | 9.90E-195 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g0888 | K27504 | - | csv:101203938 | 653.669 |