Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0947 ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCGCGCCGCGTGGTTCAGGACGGATCGACGGCTGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGATTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGTGTTGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCCGGCAGATTGACGTTTCCTATCTCTGTCAAGCAGCCTGGCCCAAGGGATTTGCTTCTTCATTGCTTCATCAAACGGAATCGATCCGGACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACATGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAACTAAGATCTAATTTTTTAGGAACCAAGTTCACCATCTTTGATGGTCAGCCACCTCATGCAGGAGCCAAGATCTCAAAAAGTCGCTCCTCTAGGCTTGTGGGCCTCAAACAAGTGTCACCTAGAGTTCCGGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTCATGGATGCGATTCCTGCCTCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGGATTCTCCCCAAGCCGTATAGACTTTCTTCCATCGATGAGATTTTCCAGGTCAAAATCGAATGGACCAAATCAAACAGATGATCAACCATCAGGATCTTCAACTAATCAGAAAGATGGACTTCTGGTGCTTAGAAACAAGGCACCGCGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAATTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACCTGCTGGACCTGAACATGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTCACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCAATCTGTCTCAGCAGCTTTGACACAAAGATCGCTTGTGAATGA 1173 47.23 MSLKSIIQEMRSRSRRVVQDGSTAEVGDALAQSCWAYMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSGQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTGFSPSRIDFLPSMRFSRSKSNGPNQTDDQPSGSSTNQKDGLLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8248324 8252394 + Tan0016110.1 Tan10g0947 765741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0947 390 CDD F-box_AtTLP-like 35 79 - -
Tan10g0947 390 Gene3D - 28 82 - -
Tan10g0947 390 SUPERFAMILY Tubby C-terminal domain-like 84 390 IPR025659 -
Tan10g0947 390 PANTHER TUBBY-RELATED 26 389 - -
Tan10g0947 390 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Tan10g0947 390 FunFam Tubby-like F-box protein 92 390 - -
Tan10g0947 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Tan10g0947 390 MobiDBLite consensus disorder prediction 272 297 - -
Tan10g0947 390 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Tan10g0947 390 Pfam Tub family 96 385 IPR000007 -
Tan10g0947 390 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Tan10g0947 390 Gene3D Tubby Protein; Chain A 92 390 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0880 Tan-Chr1:8465392 Tan10g0947 Tan-Chr10:8248324 5.70E-102 dispersed
Tan03g1987 Tan-Chr3:74918437 Tan10g0947 Tan-Chr10:8248324 2.20E-120 dispersed
Tan03g1988 Tan-Chr3:74918437 Tan10g0947 Tan-Chr10:8248324 2.20E-120 dispersed
Tan10g0947 Tan-Chr10:8248324 Tan11g1138 Tan-Chr11:8989235 2.50E-121 dispersed
Tan01g3331 Tan-Chr1:90649740 Tan10g0947 Tan-Chr10:8248324 2.20E-123 transposed
Tan06g0484 Tan-Chr6:3594205 Tan10g0947 Tan-Chr10:8248324 8.40E-11 transposed
Tan10g0947 Tan-Chr10:8248324 Tan06g2627 Tan-Chr6:78854774 5.10E-183 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28544 PF01167 Tub 6.50E-110 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0947 K19600 - csv:101217713 750.355