Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0947 ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCGCGCCGCGTGGTTCAGGACGGATCGACGGCTGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGATTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGTGTTGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCCGGCAGATTGACGTTTCCTATCTCTGTCAAGCAGCCTGGCCCAAGGGATTTGCTTCTTCATTGCTTCATCAAACGGAATCGATCCGGACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACATGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAACTAAGATCTAATTTTTTAGGAACCAAGTTCACCATCTTTGATGGTCAGCCACCTCATGCAGGAGCCAAGATCTCAAAAAGTCGCTCCTCTAGGCTTGTGGGCCTCAAACAAGTGTCACCTAGAGTTCCGGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTCATGGATGCGATTCCTGCCTCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGGATTCTCCCCAAGCCGTATAGACTTTCTTCCATCGATGAGATTTTCCAGGTCAAAATCGAATGGACCAAATCAAACAGATGATCAACCATCAGGATCTTCAACTAATCAGAAAGATGGACTTCTGGTGCTTAGAAACAAGGCACCGCGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAATTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACCTGCTGGACCTGAACATGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTCACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCAATCTGTCTCAGCAGCTTTGACACAAAGATCGCTTGTGAATGA 1173 47.23 MSLKSIIQEMRSRSRRVVQDGSTAEVGDALAQSCWAYMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSGQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTGFSPSRIDFLPSMRFSRSKSNGPNQTDDQPSGSSTNQKDGLLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8248324 8252394 + Tan0016110.1 Tan10g0947 765741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0947 390 CDD F-box_AtTLP-like 35 79 - -
Tan10g0947 390 Gene3D - 28 82 - -
Tan10g0947 390 SUPERFAMILY Tubby C-terminal domain-like 84 390 IPR025659 -
Tan10g0947 390 PANTHER TUBBY-RELATED 26 389 - -
Tan10g0947 390 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Tan10g0947 390 FunFam Tubby-like F-box protein 92 390 - -
Tan10g0947 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Tan10g0947 390 MobiDBLite consensus disorder prediction 272 297 - -
Tan10g0947 390 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Tan10g0947 390 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Tan10g0947 390 Pfam Tub family 96 385 IPR000007 -
Tan10g0947 390 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Tan10g0947 390 Gene3D Tubby Protein; Chain A 92 390 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0947 K19600 - - csv:101217713 750.355
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0880 Tan-Chr1:8465392 Tan10g0947 Tan-Chr10:8248324 5.70E-102 dispersed
Tan03g1987 Tan-Chr3:74918437 Tan10g0947 Tan-Chr10:8248324 2.20E-120 dispersed
Tan03g1988 Tan-Chr3:74918437 Tan10g0947 Tan-Chr10:8248324 2.20E-120 dispersed
Tan10g0947 Tan-Chr10:8248324 Tan11g1138 Tan-Chr11:8989235 2.50E-121 dispersed
Tan01g3331 Tan-Chr1:90649740 Tan10g0947 Tan-Chr10:8248324 2.20E-123 transposed
Tan06g0484 Tan-Chr6:3594205 Tan10g0947 Tan-Chr10:8248324 8.40E-11 transposed
Tan10g0947 Tan-Chr10:8248324 Tan06g2627 Tan-Chr6:78854774 5.10E-183 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g3331 . 1 430 TUB Transcription Factor Family AT1G76900 72.3 9.8e-178 620.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan11g1138 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G76900 70.1 4.4e-170 595.1
Tan01g1235 . 1 413 TUB Transcription Factor Family AT1G76900 51.1 4.8e-116 415.6
Tan06g2627 . 13 386 TUB Transcription Factor Family AT1G76900 50.8 9.0e-115 411.4
Tan10g0947 . 13 390 TUB Transcription Factor Family AT1G76900 51.4 2.2e-113 406.8
Tan01g0725 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.4e-101 365.2
Tan11g1139 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan11g1138 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan01g3331 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 6.8e-94 341.3
Tan01g1235 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 1.4e-70 263.8
Tan10g0947 . 154 390 TUB Transcription Factor Family AT1G25280 52.4 1.2e-69 260.8
Tan06g2627 . 154 386 TUB Transcription Factor Family AT1G25280 53.9 9.8e-69 257.7
Tan01g4949 . 181 410 TUB Transcription Factor Family AT1G25280 53.4 5.4e-67 251.9
Tan03g1988 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan03g1987 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT5G18680 63.1 1.1e-100 364.0
Tan10g0947 . 98 390 TUB Transcription Factor Family AT5G18680 62.3 1.4e-95 347.1
Tan01g3331 . 112 430 TUB Transcription Factor Family AT5G18680 53.6 1.1e-84 310.8
Tan01g0725 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 3.5e-83 305.8
Tan11g1139 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan11g1138 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan01g1235 . 115 413 TUB Transcription Factor Family AT5G18680 53.0 5.2e-79 292.0
Tan01g4949 . 117 410 TUB Transcription Factor Family AT5G18680 51.2 1.6e-75 280.4
Tan03g1988 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan03g1987 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan01g0880 . 119 387 TUB Transcription Factor Family AT5G18680 50.7 1.9e-68 256.9
Tan01g1235 . 1 413 TUB Transcription Factor Family AT2G18280 61.6 4.0e-143 505.4
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan01g4949 . 3 410 TUB Transcription Factor Family AT2G18280 59.0 3.2e-124 442.6
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 2.6e-118 422.9
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 4.2e-116 415.6
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G18280 53.6 9.3e-116 414.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G18280 52.9 2.5e-113 406.4
Tan01g0880 . 54 387 TUB Transcription Factor Family AT2G18280 51.3 5.3e-95 345.5
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G47900 56.6 6.0e-134 474.9
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 3.6e-131 465.7
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan01g1235 . 5 413 TUB Transcription Factor Family AT2G47900 55.2 6.8e-122 434.9
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan01g4949 . 15 410 TUB Transcription Factor Family AT2G47900 55.4 4.3e-116 415.6
Tan01g0880 . 55 387 TUB Transcription Factor Family AT2G47900 52.9 1.2e-102 370.9
Tan06g0484 . 79 304 TUB Transcription Factor Family AT1G16070 60.0 2.7e-72 269.6
Tan01g3331 . 67 430 TUB Transcription Factor Family AT1G43640 70.2 1.1e-147 520.4
Tan01g0725 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.8e-145 513.1
Tan11g1139 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan11g1138 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan06g2627 . 47 386 TUB Transcription Factor Family AT1G43640 52.3 1.9e-107 386.7
Tan10g0947 . 49 390 TUB Transcription Factor Family AT1G43640 53.3 2.7e-106 382.9
Tan01g4949 . 36 410 TUB Transcription Factor Family AT1G47270 63.3 3.3e-134 475.7
Tan01g1235 . 34 413 TUB Transcription Factor Family AT1G47270 58.3 7.7e-123 438.0
Tan03g1988 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan03g1987 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 2.0e-115 413.3
Tan01g3331 . 31 430 TUB Transcription Factor Family AT1G47270 52.1 9.4e-113 404.4
Tan11g1139 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan11g1138 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan06g2627 . 1 386 TUB Transcription Factor Family AT1G47270 51.1 1.5e-110 397.1
Tan10g0947 . 1 390 TUB Transcription Factor Family AT1G47270 50.1 9.5e-105 377.9
Tan01g0880 . 1 387 TUB Transcription Factor Family AT1G53320 71.8 3.9e-156 548.5
Tan01g1235 . 20 413 TUB Transcription Factor Family AT1G53320 51.3 1.0e-103 374.4
Tan06g2627 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 1.5e-102 370.5
Tan10g0947 . 33 390 TUB Transcription Factor Family AT1G53320 51.9 3.4e-99 359.4
Tan10g0947 . 98 390 TUB Transcription Factor Family AT3G06380 64.8 1.4e-97 353.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT3G06380 63.1 2.0e-96 349.7
Tan01g0725 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 5.8e-83 305.1
Tan01g3331 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 3.7e-82 302.4
Tan11g1139 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan11g1138 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan01g1235 . 119 413 TUB Transcription Factor Family AT3G06380 53.8 5.1e-79 292.0
Tan01g4949 . 121 410 TUB Transcription Factor Family AT3G06380 50.7 7.3e-78 288.1
Tan03g1988 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
Tan03g1987 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28544 PF01167 Tub 6.50E-110 CL0395 Tan TF