Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0948 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGCCAAGCCCGTCGAGGAGAGAGCGAAGGCCGAGAACGAAATTAGGGCTTCTGCGAAATCGGAGGTTGCTGAAGTTCGAGCTAATGTTGATGCTAATGTTGGCAATGGGGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGTTCGAGGCCGAGGCGGCGATCGTCTAGGCCGAATCCGAGATTGAGTAATCCGCCGAAGCATGTGCATGGGGAGCAAGTCGCCGCCGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGTGAGGCTATCAATGGATGGATTCCTCGCCGTGCTGATAGTTTCCAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTTTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATTCTGCGACGTTTGGATCATCCCAATGTTGTTAAACTCGAAGGTTTGGTGACATCCCGGATGTCGTGTAGTTTATATCTTGTTTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACGGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGATAACGATGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCCGTCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTGGCTGAACTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCACATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACATTTAAAGACTTCCCGCCGTCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGACCCGGCTGAACGCTTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTACCCAAGTATCCTCCAAGTAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGCAGATGGGGTGAAGAAAACACGGTCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTTGATAGGCGGCGCCTCATAACACACGCAAATGCGAAGAGCAAGAGTGAAAAATTTCCTCCTCCACATCAAGACGGAGCACTCGGCTACCCTTTGGGATCTTCACATCACGTCGATCCAATCTACGATCCTCCTGACGTTCCATTTAGCACTATGAATTTCTCATATCCAAAAGCAAGCATCCAAACATGGTCTGGTCCGTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGCCATTCATCAAAGTCATCCAAGGACTTGCATAAGGATAAAGATTCTGCTCGTATCTAA 1701 47.74 MGCVFGREVSAKPVEERAKAENEIRASAKSEVAEVRANVDANVGNGGSRKEVEDDRGSRPRRRSSRPNPRLSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFQKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKTRSRDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKDKDSARI 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8276276 8280472 - Tan0019064.1 Tan10g0948 765742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0948 566 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
Tan10g0948 566 SMART serkin_6 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0948 566 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Tan10g0948 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan10g0948 566 PANTHER CELL DIVISION PROTEIN KINASE 109 394 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Tan10g0948 566 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524(InterPro)
Tan10g0948 566 Gene3D Transferase(Phosphotransferase) domain 1 193 433 - -
Tan10g0948 566 MobiDBLite consensus disorder prediction 10 30 - -
Tan10g0948 566 MobiDBLite consensus disorder prediction 550 566 - -
Tan10g0948 566 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Tan10g0948 566 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Tan10g0948 566 MobiDBLite consensus disorder prediction 474 495 - -
Tan10g0948 566 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0948 566 MobiDBLite consensus disorder prediction 524 566 - -
Tan10g0948 566 MobiDBLite consensus disorder prediction 47 62 - -
Tan10g0948 566 CDD STKc_CDK9_like 110 394 - -
Tan10g0948 566 MobiDBLite consensus disorder prediction 1 82 - -
Tan10g0948 566 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1373 Tan-Chr3:70215394 Tan10g0948 Tan-Chr10:8276276 2.50E-122 dispersed
Tan05g0764 Tan-Chr5:5558954 Tan10g0948 Tan-Chr10:8276276 3.10E-164 dispersed
Tan05g0765 Tan-Chr5:5567601 Tan10g0948 Tan-Chr10:8276276 7.60E-157 dispersed
Tan05g3001 Tan-Chr5:81954766 Tan10g0948 Tan-Chr10:8276276 5.90E-201 dispersed
Tan09g0363 Tan-Chr9:34041110 Tan10g0948 Tan-Chr10:8276276 2.80E-235 dispersed
Tan09g0364 Tan-Chr9:34041110 Tan10g0948 Tan-Chr10:8276276 2.20E-188 dispersed
Tan10g0948 Tan-Chr10:8276276 Tan11g2116 Tan-Chr11:50229547 3.30E-175 dispersed
Tan10g0948 Tan-Chr10:8276276 Tan10g0949 Tan-Chr10:8276276 2.80E-267 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68135 PF00069 Pkinase 1.90E-69 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0948 K08819 - csv:101217952 1014.99