Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0949 ATGAACGAAACCAGAATTCCCATTGTATGTATTGTTGTTGAACAGATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTTTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATTCTGCGACGTTTGGATCATCCCAATGTTGTTAAACTCGAAGGTTTGGTGACATCCCGGATGTCGTGTAGTTTATATCTTGTTTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACGGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGATAACGATGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCCGTCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTGGCTGAACTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCACATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACATTTAAAGACTTCCCGCCGTCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGACCCGGCTGAACGCTTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTACCCAAGTATCCTCCAAGTAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGCAGATGGGGTGAAGAAAACACGGTCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTTGATAGGCGGCGCCTCATAACACACGCAAATGCGAAGAGCAAGAGTGAAAAATTTCCTCCTCCACATCAAGACGGAGCACTCGGCTACCCTTTGGGATCTTCACATCACGTCGATCCAATCTACGATCCTCCTGACGTTCCATTTAGCACTATGAATTTCTCATATCCAAAAGCAAGCATCCAAACATGGTCTGGTCCGTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGCCATTCATCAAAGTCATCCAAGGACTTGCATAAGGATAAAGATTCTGCTCGTATCTAA 1401 45.54 MNETRIPIVCIVVEQIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKTRSRDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKDKDSARI 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8276276 8279428 - Tan0019064.2 Tan10g0949 765743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0949 466 Gene3D Transferase(Phosphotransferase) domain 1 93 333 - -
Tan10g0949 466 ProSiteProfiles Protein kinase domain profile. 10 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0949 466 SMART serkin_6 10 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0949 466 Pfam Protein kinase domain 12 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0949 466 FunFam probable serine/threonine-protein kinase At1g54610 10 92 - -
Tan10g0949 466 PANTHER CELL DIVISION PROTEIN KINASE 13 294 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Tan10g0949 466 MobiDBLite consensus disorder prediction 450 466 - -
Tan10g0949 466 CDD STKc_CDK9_like 12 294 - -
Tan10g0949 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan10g0949 466 FunFam probable serine/threonine-protein kinase At1g54610 93 334 - -
Tan10g0949 466 Gene3D Phosphorylase Kinase; domain 1 11 92 - -
Tan10g0949 466 MobiDBLite consensus disorder prediction 424 466 - -
Tan10g0949 466 MobiDBLite consensus disorder prediction 374 395 - -
Tan10g0949 466 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Tan10g0949 466 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0949 Tan-Chr10:8276276 Tan11g2116 Tan-Chr11:50229547 7.00E-155 dispersed
Tan10g0948 Tan-Chr10:8276276 Tan10g0949 Tan-Chr10:8276276 2.80E-267 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68136 PF00069 Pkinase 2.80E-69 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0949 K08819 - csv:101217952 862.062