Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0975 ATGGCCGCCATTTCAATTTGCTTTGCTCCACAAGCTCTTGCACGGCCCAAAATTCGGAACCCTAGAAGAATACCGTCGCCCAAGAAGCTTCATGGGAACAACAAGCTCGATCGTAACAGCGTCAAGATCAGAACCAATCCAAAGGAGTTATCTTCCATTGGCGTTGAAGCCACTACCTACACTCGCCTCCCTCCCAAGGAAGATTTTGCTATCCTTAGCTTTGGTTCTCTGTCTTCTGATTCTTCCTCTTCTTCTTCTTCGAAGGATTCATCTGAGGTAAAGCTTTTGGATTCGGATGTTGCGGTAATTGAGGAGGAAGATGATTCGGATTCTTTGAACTATGAAGAGAGGGAGGAAGAAGAGGAAGGAGGATTGGATGGGAATTTGGGGTTTGGGAATGGTTATGGGAAGTTTGAAGTGTTTGAGGGGGAATATGACTCTGAAATGGAGGAGCATGGTGATGGTAGTGATGTGGAAGAGGAAGATGAAGAAGGAGAGGAGGTTTTGACATTTAGGAAGGGGAAATTTGTTAATACTGATGAAGTGGAAACCTATTATGATGATGCTTACGACGCTGGGGAAGAAGATGTGAAGGAGAAGGGGCTGCCAGCAGTAATGCGGTGCTTTGATCGAGCAAAAATCTACGTTAAAGCTGGAGATGGTGGAAATGGCGTTGTGGCATTTCGGCGCGAGAAGTATGTGCCGATGGGGGGCCCTTCAGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGATGAGTCGATGAATTCGCTATTGCCATTTCGAAATGGTATACATTTTCGTGCAGGAAGGGGTAGTCATGGGAAGGGGAGAATGCAGAACGGGGCAAAGGGTGAGGATGTGGTGGTGAAAGTGGCGCCTGGAACAGTGATCAGAGATGCATTCAGCCAGGAGGTTCTGCTGGAATTGTTGCATCCGGGGCAGCGGGCTCTGTTGCTGCGCGGTGGAAGAGGTGGACGAGGCAATGCATCATTCAAGTCCGGAACAAATAAGGTTCCAAAAATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTCAAGCTTGTTGCAGACATTGGAATCGTGGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCCCAGCCAGCCATAGCAAATTACCCTTTTACCACTCTACTCCCAAACTTAGGTGTTGTTTCGTTCGACTATGATTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGGGCACACGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCACACCGAAAGGTGTTCTGCATTGGTGCATGTGGTTGATGGATCAGGACCACAACCTGAATATGAATTTGATGCTGTCCGTTTGGAGTTGGAGCTCTTTAGCCCTGAACTAGCTGAAAAACCCTATCTTGTTGCCTATAATAAAATGGATCTTCCTGAAGCGTACGAGAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCGTGGGATTGAACCTTTTTGCATGAGTGCCGTAAAAAGAGAGGGCACCCATGAAGTCATTAGTGCTGCATATCAGCTGCTAAGGGAAAATAAAGAAGCCAACAGGGAATTTCAAGGTGGCAAAATACCAGAGAATCTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTTTGAAATTATTCATGATAGCGGTTCCTGGCATGTAGTAGGATCTGGTTTACAACGTTTTGTTCAGATGACAAATTGGCGTTACATGGAGTCTGAAAGAAGGTTCCAACATGTCATGGAGGCATGTGGTGTCAACAAATCTCTCAGAAAACTTGGCGTCAAGGAGGGCGATACAGTATTTGTTGCTGAGATGGAGATGATCTGGCATGATTCACCCAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCGGTCAAATGGCCAGAGTGGAAGTAA 1986 46.22 MAAISICFAPQALARPKIRNPRRIPSPKKLHGNNKLDRNSVKIRTNPKELSSIGVEATTYTRLPPKEDFAILSFGSLSSDSSSSSSSKDSSEVKLLDSDVAVIEEEDDSDSLNYEEREEEEEGGLDGNLGFGNGYGKFEVFEGEYDSEMEEHGDGSDVEEEDEEGEEVLTFRKGKFVNTDEVETYYDDAYDAGEEDVKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNGIHFRAGRGSHGKGRMQNGAKGEDVVVKVAPGTVIRDAFSQEVLLELLHPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADIGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLRENKEANREFQGGKIPENLDHVADRIHKQRSASIDDFEIIHDSGSWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGVKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8498985 8510368 + Tan0003291.2 Tan10g0975 765769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0975 661 ProSiteProfiles Obg C-terminal (OCT) domain profile. 561 638 IPR015349 GO:0000166(InterPro)
Tan10g0975 661 CDD Obg 365 532 IPR031167 GO:0005525(InterPro)
Tan10g0975 661 PRINTS GTP1/OBG GTP-binding protein family signature 367 387 IPR006073 GO:0005525(InterPro)
Tan10g0975 661 PRINTS GTP1/OBG GTP-binding protein family signature 388 406 IPR006073 GO:0005525(InterPro)
Tan10g0975 661 PRINTS GTP1/OBG GTP-binding protein family signature 416 431 IPR006073 GO:0005525(InterPro)
Tan10g0975 661 PRINTS GTP1/OBG GTP-binding protein family signature 433 451 IPR006073 GO:0005525(InterPro)
Tan10g0975 661 MobiDBLite consensus disorder prediction 30 44 - -
Tan10g0975 661 FunFam GTPase Obg 206 363 - -
Tan10g0975 661 Pfam 50S ribosome-binding GTPase 367 486 IPR006073 GO:0005525(InterPro)
Tan10g0975 661 Gene3D - 364 543 IPR027417 -
Tan10g0975 661 ProSiteProfiles Obg domain profile. 206 364 IPR006169 -
Tan10g0975 661 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 365 533 IPR031167 GO:0005525(InterPro)
Tan10g0975 661 Gene3D - 571 639 IPR036346 -
Tan10g0975 661 SUPERFAMILY Obg GTP-binding protein N-terminal domain 209 363 IPR036726 -
Tan10g0975 661 Hamap GTPase Obg [obg]. 207 533 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Tan10g0975 661 MobiDBLite consensus disorder prediction 17 47 - -
Tan10g0975 661 MobiDBLite consensus disorder prediction 639 661 - -
Tan10g0975 661 MobiDBLite consensus disorder prediction 76 130 - -
Tan10g0975 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 536 IPR027417 -
Tan10g0975 661 Gene3D GTP1/OBG domain 204 363 IPR036726 -
Tan10g0975 661 MobiDBLite consensus disorder prediction 76 91 - -
Tan10g0975 661 NCBIfam Obg family GTPase CgtA 209 532 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Tan10g0975 661 SUPERFAMILY Obg GTP-binding protein C-terminal domain 568 638 IPR036346 -
Tan10g0975 661 ProSitePatterns GTP1/OBG family signature. 418 431 IPR006074 GO:0005525(InterPro)
Tan10g0975 661 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 170 540 IPR045086 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005739(PANTHER)
Tan10g0975 661 FunFam GTPase Obg 364 543 - -
Tan10g0975 661 NCBIfam Obg family GTPase CgtA C-terminal domain 569 636 IPR015349 GO:0000166(InterPro)
Tan10g0975 661 MobiDBLite consensus disorder prediction 101 125 - -
Tan10g0975 661 Pfam Domain of unknown function (DUF1967) 569 636 IPR015349 GO:0000166(InterPro)
Tan10g0975 661 Pfam GTP1/OBG 210 363 IPR006169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0975 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0974 Tan-Chr10:8498985 Tan10g0975 Tan-Chr10:8498985 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33