Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0977 ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCACTCCGATCCGTCGCCGGAATGGACCGCTTCGGGACCCGATACAAGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCCGAACGGCCTGAAGAGGACGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCGAGACCTGGTGGAAGGGACTATCCCGAACGAGTAGGGCAGCCTGTGTGCCAGTACTATATGAGAACAGGAATGTGCAAATTTGGTGTTTCCTGTAAGTATCACCATCCTCAGCAGGAAAAAGGTTCTCTAGGCCCCGTGTCGTTGAATTTCTATGGCTACCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCACCACCCTGAACCAGCTGGCTTGCAGTTTCCAGCACCATCGCCCGTGCAGGTTACACCATTGCCAGCTCCAATGCCTCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCATCTGCTCATTCCTCACAACAATATGGAGTAATACTAGCGAGATCTCCATTGCTGTCGAGCCCATATGTTCCCAGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTCTATGGTATGGCACAAGTTTCGCCTTCTGCATCTGCCTATGCAGGATCTTATCAACCCATGCCATCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATGAGAACGGGAGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTTCTTCGAGGTCAAGTGTTGTTCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGACCGACTTAGTTACAGTCCATCTGCATCATCGCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAATCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCCTTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCGTCAGCGAGCAGTACCTCCAGCACCACCAGTGCGGAGGGTCGTACTTGA 1446 50.21 MKPYGQSMEGSHSDPSPEWTASGPDTSHGEPVWPLGSRERESYPERPEEDDCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRPGGRDYPERVGQPVCQYYMRTGMCKFGVSCKYHHPQQEKGSLGPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPLPAPMPPAPSVYPPVQSPSAHSSQQYGVILARSPLLSSPYVPSPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGQLYGMAQVSPSASAYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVSSRSSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMPSHSSVQRSSQSSGPSASSTSSTTSAEGRT 481
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 8544136 8548661 - Tan0018479.1 Tan10g0977 765771
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0977 481 PANTHER PROTEIN PHOSPHATASE RELATED 38 377 IPR050974 GO:0003729(PANTHER)
Tan10g0977 481 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 MobiDBLite consensus disorder prediction 280 306 - -
Tan10g0977 481 SUPERFAMILY CCCH zinc finger 95 121 IPR036855 GO:0046872(InterPro)
Tan10g0977 481 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 MobiDBLite consensus disorder prediction 425 481 - -
Tan10g0977 481 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 SMART c3hfinal6 349 376 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 SMART c3hfinal6 303 330 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 MobiDBLite consensus disorder prediction 1 44 - -
Tan10g0977 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 376 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 330 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 SUPERFAMILY CCCH zinc finger 307 330 IPR036855 GO:0046872(InterPro)
Tan10g0977 481 MobiDBLite consensus disorder prediction 405 481 - -
Tan10g0977 481 SUPERFAMILY CCCH zinc finger 47 74 IPR036855 GO:0046872(InterPro)
Tan10g0977 481 Gene3D - 295 343 - -
Tan10g0977 481 Gene3D - 42 122 - -
Tan10g0977 481 Gene3D - 123 171 - -
Tan10g0977 481 FunFam CCCH type zinc finger protein 301 386 - -
Tan10g0977 481 Gene3D - 349 395 - -
Tan10g0977 481 MobiDBLite consensus disorder prediction 9 23 - -
Tan10g0977 481 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872(InterPro)
Tan10g0977 481 MobiDBLite consensus disorder prediction 280 300 - -
Tan10g0977 481 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Tan10g0977 481 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872(InterPro)
Tan10g0977 481 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0977 Tan-Chr10:8544136 Tan10g0978 Tan-Chr10:8544136 1.70E-132 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28547 PF00642 zf-CCCH 1.30E-07 CL0537 Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0977 - - - 0.0