Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan10g0977 | ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCACTCCGATCCGTCGCCGGAATGGACCGCTTCGGGACCCGATACAAGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCCGAACGGCCTGAAGAGGACGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCGAGACCTGGTGGAAGGGACTATCCCGAACGAGTAGGGCAGCCTGTGTGCCAGTACTATATGAGAACAGGAATGTGCAAATTTGGTGTTTCCTGTAAGTATCACCATCCTCAGCAGGAAAAAGGTTCTCTAGGCCCCGTGTCGTTGAATTTCTATGGCTACCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCACCACCCTGAACCAGCTGGCTTGCAGTTTCCAGCACCATCGCCCGTGCAGGTTACACCATTGCCAGCTCCAATGCCTCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCATCTGCTCATTCCTCACAACAATATGGAGTAATACTAGCGAGATCTCCATTGCTGTCGAGCCCATATGTTCCCAGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTCTATGGTATGGCACAAGTTTCGCCTTCTGCATCTGCCTATGCAGGATCTTATCAACCCATGCCATCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATGAGAACGGGAGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTTCTTCGAGGTCAAGTGTTGTTCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGACCGACTTAGTTACAGTCCATCTGCATCATCGCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAATCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCCTTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCGTCAGCGAGCAGTACCTCCAGCACCACCAGTGCGGAGGGTCGTACTTGA | 1446 | 50.21 | MKPYGQSMEGSHSDPSPEWTASGPDTSHGEPVWPLGSRERESYPERPEEDDCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRPGGRDYPERVGQPVCQYYMRTGMCKFGVSCKYHHPQQEKGSLGPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPLPAPMPPAPSVYPPVQSPSAHSSQQYGVILARSPLLSSPYVPSPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGQLYGMAQVSPSASAYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVSSRSSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMPSHSSVQRSSQSSGPSASSTSSTTSAEGRT | 481 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 8544136 | 8548661 | - | Tan0018479.1 | Tan10g0977 | 765771 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan10g0977 | 481 | PANTHER | PROTEIN PHOSPHATASE RELATED | 38 | 377 | IPR050974 | GO:0003729(PANTHER) | |
| Tan10g0977 | 481 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | MobiDBLite | consensus disorder prediction | 280 | 306 | - | - | |
| Tan10g0977 | 481 | SUPERFAMILY | CCCH zinc finger | 95 | 121 | IPR036855 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | ProSiteProfiles | Zinc finger C3H1-type profile. | 303 | 331 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | MobiDBLite | consensus disorder prediction | 425 | 481 | - | - | |
| Tan10g0977 | 481 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | SMART | c3hfinal6 | 349 | 376 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | SMART | c3hfinal6 | 303 | 330 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Tan10g0977 | 481 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 351 | 376 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 304 | 330 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | SUPERFAMILY | CCCH zinc finger | 307 | 330 | IPR036855 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | MobiDBLite | consensus disorder prediction | 405 | 481 | - | - | |
| Tan10g0977 | 481 | SUPERFAMILY | CCCH zinc finger | 47 | 74 | IPR036855 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | Gene3D | - | 295 | 343 | - | - | |
| Tan10g0977 | 481 | Gene3D | - | 42 | 122 | - | - | |
| Tan10g0977 | 481 | Gene3D | - | 123 | 171 | - | - | |
| Tan10g0977 | 481 | FunFam | CCCH type zinc finger protein | 301 | 386 | - | - | |
| Tan10g0977 | 481 | Gene3D | - | 349 | 395 | - | - | |
| Tan10g0977 | 481 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
| Tan10g0977 | 481 | SUPERFAMILY | CCCH zinc finger | 353 | 380 | IPR036855 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | MobiDBLite | consensus disorder prediction | 280 | 300 | - | - | |
| Tan10g0977 | 481 | SUPERFAMILY | CCCH zinc finger | 140 | 166 | IPR036855 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | ProSiteProfiles | Zinc finger C3H1-type profile. | 349 | 377 | IPR000571 | GO:0046872(InterPro) | |
| Tan10g0977 | 481 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan10g0977 | Tan-Chr10:8544136 | Tan10g0978 | Tan-Chr10:8544136 | 1.70E-132 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28547 | PF00642 | zf-CCCH | 1.30E-07 | CL0537 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan10g0977 | - | - | - | 0.0 |