Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1000 ATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGGTAACATAGGTGGAATTCAAGAGGTTTCTGACAAGTTTGAGATCCAGCCTGGACTTCGAAGGATCAGCAGTTTCTCTTGTTTATCTGGGGCTGCCTTGAGTGCAAATGCCACCCTAGCAAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATACTTCCGACCTGGGACTCTCCTAACTCCTTCCGCAAGGTTCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCGACCCCAACATCTGAATATGATTCATACCTGTTGAAATCCATGAGTGCTCCTTCAGGAGGTGAAGGTTTTCTTAATGTTATGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGGAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTGTATGAAACCATCGTATTTTATTTTAACCTACTAGATTGGGAGGCTAAGAATGAAACCTCGGATGTTTTGGACATGGATAATTCACATCTTGATGATAGTAGCATTACTCGGGGAAGATTTTCTCCTTTGAGAAACAATAGTAAAATTGCTTCAGATATCAACAATTTATTCGAGAACCATTCACATGCCAAAGCAGGAATGGAAAACTATCCACTAAGGCATGGGGTGCTTGATAGCCTCCAGCGGGCTCTTTGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACTCTAAATTTGGGTGATAGTAGAGCGGTACTAGCTACCCTTGATGAAGGTGCAATGAGAGGAAATGGGGGACTGAAAGCCATCCAGCTCACTGACAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACGTGATCATCCTGATGATCCCACAATCATTGTTGCTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGAAAAAGTTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCGGCATTGTCTGTCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGCAGTGATGGTCTATTTGACTTTTTTGGCAATGACGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATTTTTACTGGAGCAGCTCTTATTGAAAGCAGCTGATTGCGCAGGTTTCAGCAAGGAAGAATTAATTACCATTCCAGCCGGCAGAAGAAGGAAATATCATGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATGTAA 1563 41.71 MLQEASTKPEGELEVSFGYKCNGNIGGIQEVSDKFEIQPGLRRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGGEGFLNVMEVQVAGGAAGEDRVQAVCSEENGWLFCGIYDGFNGRDAADFLAGTLYETIVFYFNLLDWEAKNETSDVLDMDNSHLDDSSITRGRFSPLRNNSKIASDINNLFENHSHAKAGMENYPLRHGVLDSLQRALCQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNGGLKAIQLTDSHTVDNELERAQLQRDHPDDPTIIVAGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSVHRISKSDCFVIVGSDGLFDFFGNDEAVNLVHSYILSNPTGDPAKFLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8824062 8829986 - Tan0005818.2 Tan10g1000 765794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1000 520 ProSiteProfiles PPM-type phosphatase domain profile. 139 507 IPR001932 -
Tan10g1000 520 SMART PP2C_4 130 505 IPR001932 -
Tan10g1000 520 CDD PP2Cc 152 507 IPR001932 -
Tan10g1000 520 SUPERFAMILY PP2C-like 153 508 IPR036457 -
Tan10g1000 520 PANTHER PROTEIN PHOSPHATASE 2C 149 505 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Tan10g1000 520 Pfam Protein phosphatase 2C 280 458 IPR001932 -
Tan10g1000 520 Gene3D - 119 516 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0390 Tan-Chr5:2812307 Tan10g1000 Tan-Chr10:8824062 7.00E-61 dispersed
Tan05g0391 Tan-Chr5:2812307 Tan10g1000 Tan-Chr10:8824062 2.80E-51 dispersed
Tan10g1000 Tan-Chr10:8824062 Tan08g0349 Tan-Chr8:3108855 4.20E-07 dispersed
Tan10g0999 Tan-Chr10:8824062 Tan10g1000 Tan-Chr10:8824062 2.40E-223 tandem
Tan10g1000 Tan-Chr10:8824062 Tan10g1001 Tan-Chr10:8824062 2.30E-223 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1000 - - - 0.0