Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1001 ATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGGTAACATAGGTGGAATTCAAGAGGTTTCTGACAAGTTTGAGATCCAGCCTGGACTTCGAAGGATCAGCAGTTTCTCTTGTTTATCTGGGGCTGCCTTGAGTGCAAATGCCACCCTAGCAAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATACTTCCGACCTGGGACTCTCCTAACTCCTTCCGCAAGGTTCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCGACCCCAACATCTGAATATGATTCATACCTGTTGAAATCCATGAGTGCTCCTTCAGGAGGTGAAGGTTTTCTTAATGTTATGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGGAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTGTATGAAACCATCGTATTTTATTTTAACCTACTAGATTGGGAGGCTAAGAATGAAACCTCGGATGTTTTGGACATGGATAATTCACATCTTGATGATAGTAGCATTACTCGGGGAAGATTTTCTCCTTTGAGAAACAATAGTAAAATTGCTTCAGATATCAACAATTTATTCGAGAACCATTCACATGCCAAAGCAGGAATGGAAAACTATCCACTAAGGCATGGGGTGCTTGATAGCCTCCAGCGGGCTCTTTGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACTCTAAATTTGGGTGATAGTAGAGCGGTACTAGCTACCCTTGATGAAGGTGCAATGAGAGGAAATGGGGGACTGAAAGCCATCCAGCTCACTGACAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACGTGATCATCCTGATGATCCCACAATCATTGTTGCTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGGTATGCGACAGTTATACATTGCCTGCCTGTGATCAGTATGGCCATAATCTCATATAA 1227 42.14 MLQEASTKPEGELEVSFGYKCNGNIGGIQEVSDKFEIQPGLRRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGGEGFLNVMEVQVAGGAAGEDRVQAVCSEENGWLFCGIYDGFNGRDAADFLAGTLYETIVFYFNLLDWEAKNETSDVLDMDNSHLDDSSITRGRFSPLRNNSKIASDINNLFENHSHAKAGMENYPLRHGVLDSLQRALCQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNGGLKAIQLTDSHTVDNELERAQLQRDHPDDPTIIVAGKVKGKLKVTRAFGVGYLKTVCDSYTLPACDQYGHNLI 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8824062 8829986 - Tan0005818.3 Tan10g1001 765795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1001 408 CDD PP2Cc 152 389 IPR001932 -
Tan10g1001 408 SMART PP2C_4 130 408 IPR001932 -
Tan10g1001 408 Pfam Protein phosphatase 2C 280 390 IPR001932 -
Tan10g1001 408 ProSiteProfiles PPM-type phosphatase domain profile. 139 408 IPR001932 -
Tan10g1001 408 Gene3D - 119 401 IPR036457 -
Tan10g1001 408 SUPERFAMILY PP2C-like 153 390 IPR036457 -
Tan10g1001 408 PANTHER PROTEIN PHOSPHATASE 2C 149 389 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0999 Tan-Chr10:8824062 Tan10g1001 Tan-Chr10:8824062 2.40E-223 dispersed
Tan10g1000 Tan-Chr10:8824062 Tan10g1001 Tan-Chr10:8824062 2.30E-223 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1001 - - - 0.0