Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1011 ATGAAGATGCTTTTAAGGAACAAAGGTGCAGGACAAATCTATTGTCTTGATTTGAAGTGCAGAAACCCACTTAAATTCTCTGTTAAATTTTTATCCTCATGCTTCGGAAATTCTTCTCAAACAAACGAAAATGGGGCCCCAGTTTTGGATGGCGGTAATCTGGTGCCTTCAGCAAAGAACGAAGACAAGAGACAAGTTCTAGATGGTGTGTGCGAAATTTTGGAGACTGGTCCTTGGGGATCTTCTGTTGAGAATGCTTTAGCGGAGGTTGACATAAAACCAAATCCAGAATTGGTAATTGGAGTCTTAAGAAGGCTAAAGGATGTAAATATTGCAGTAAATTACTTTCGATGGGCCGAGAGAGTAACAGACCAAGCGCATTGCCCTGAAGCATACAATTCACTTCTCATGGTTATGGCTAGAACTAGAAAGTTTAATTGCTTGGAACAAGTATTGGAAGAAATGAGTATTGCAGGTTTTGGCCCATCAAATAACACGTGTATTGAAATTGTACTGAGCCTTGTCAAGTCACACAAGCTTAGAGAAGCATTTACATTTATGCAAACTATGAGAAAGTTCAAATTCCGCCCAGCCTTTTCTGCATACACAACTTTGATTGGTGCGCTATCTGCATCTCATGATTCTGATAGCATGCTCACCCTCTTTAATCAAATGCAGGAGCTTGGCTATGAAGTTAATGTTCATTTATTCACAACTCTCATTCGTGTATTTGCTAGAGAGGGTCGAGTTGATGCTGCACTTTCTCTTTTGGATGAGATGAAAAGCAACTCTTTTGAACCAGATGCTGTTCTTTACAATGTCTGTATTGACTGCTTTGGGAAGGCTGGGAAGGTGGATATGGCATGGAAATTTTTTCATGAAATGAAAGCTAATGGTTTGGTGCTTGATGATGTAACTTATACTAGCATGATAGGAGTTCTCTGTAAAGCTGACAGGCTGGATGAAGCTGTTGAGCTATTTGAACATATGGATCAAAACAAGCAGGTGCCTTGTGCATATGCATACAATACAATGATCATGGGTTATGGTATGGCTGGAAAGTTTGATGAAGCATACAGTCTACTTGAGAGACAGAGAAGAAAGGGATGCATTCCAAGCGTTGTCGCATATAATTGCATTCTTACTTGTATGGGGAGGAAGGGGCGGGTAGCCGAGGCATTAAAAGTTTTTGAAGAGATGAAGAAAGATGCCATTCCCAATCTTTCAACATATAATATTGTGATTGACATGCTCTGTAAGGCTGGAAAACTCGAGACAGCATTGGTTGTTCGGGATGCCATGAAAGATGCTGGGTTGTTCCCTAATGTTATGACAGTAAACATAATGGTTGACAGATTGTGTAAAGCCCAAAGACTTGATGATGCTTGTTCAATTTTTGAAGGATTGGATCATAAAGCTTGCACACCTGATATAGTAACATATTGTTCTCTTATAGATGGATTGGGCAAGCATGGGAGAGTTGATGATGCCTACAAGCTGTATGAAAAGATGTTGGATTCTGACCAGATCCCAAATGCTATTGTGTATACATCTCTCATAAGGAACTTTTTCAAGTGTGGAAGGAAGGAGGATGGCCACAAGATATACAACGAAATGATACGTCTTGGTTGTTCTCCTGACCTGATTCTTCTTAATACCTACATGGATTGCATTTTTAAAGCTGGAGAAACTGAGAAGGGCAGAGCTTTGTTTCAGGAGATTAAGGCCCAAGGATTTATTCCAGATGCGAGGAGCTTTTCAGTCCTAATTAATGGCTTGGTGAAAGCTGGTTTTGCGCATGAATCTTATGAGTTGTTCTACACAATGAAGGAACAAGGCTGTGTTCTGGATACTCGTGCATATAACACTGTTATTGATGGATTCTGCAAGTCTGGTAAGGTAAACAAAGCTTACCAACTGCTAGAGGAGATGAAGACAAAGGGTCATGAACCCACCGTTGTTACTTACGGTTCCGTTATTGACGGGCTTGCAAAGATTGACCGGCTTGATGAAGCATATATGCTCTTTGAAGAAGCAAAGTCGAAAGGAGTAGAAGTAAATGTTATCATATATAGCAGTCTGATCGATGGATTCGGGAAGGTGGGTAGAATTGATGAAGCATACCTGATCATGGAAGAGTTGATGCAGAAAGGTTTGACACCTAATGTATACACATGGAATTGCTTGCTTGATGCATTGGTGAAAGCAGAGGAAATTAGCGAAGCTCTTGTTTGCTTTCAGTCTATGAAAGACTTGAAATGTACTCCTAATTATATAACTTACGGCATTCTAATTCATGGTCTTTGTAAGATTAGAAAGTTCAACAAGGCATTTGTGTTCTGGCAAGAGATGCAGAAGCAAGGCTTAAAGCCTAACGTATTCACCTACACCACGATGATCTCAGGACTTGCTAAGGCTGGAAACATCGTGGAGGCAAACGCTCTTTTCGAGAAGTTTAAGGCAAAGGGCGGCGTGCCTGATTCTGCTACTTACAATGCTATAATAGAAGGGTTGAGTAATGCAAACAGGGCATTGGATGCTTATAGACTTTTTGAGGAAACTCGATCAAAAGGTTGTAGTATTCACACGAAAACTTGTGTTGTTCTATTAGATTCGCTACATAAGGCTGAATGCATTGAGCAGGCTGCAATCGTAGGCGCTGTATTACGAGAAACGGCGAAGGCTCAGCATGCTGCCAGATCTTGGACATAG 2712 40.74 MKMLLRNKGAGQIYCLDLKCRNPLKFSVKFLSSCFGNSSQTNENGAPVLDGGNLVPSAKNEDKRQVLDGVCEILETGPWGSSVENALAEVDIKPNPELVIGVLRRLKDVNIAVNYFRWAERVTDQAHCPEAYNSLLMVMARTRKFNCLEQVLEEMSIAGFGPSNNTCIEIVLSLVKSHKLREAFTFMQTMRKFKFRPAFSAYTTLIGALSASHDSDSMLTLFNQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSFEPDAVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLDEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFDEAYSLLERQRRKGCIPSVVAYNCILTCMGRKGRVAEALKVFEEMKKDAIPNLSTYNIVIDMLCKAGKLETALVVRDAMKDAGLFPNVMTVNIMVDRLCKAQRLDDACSIFEGLDHKACTPDIVTYCSLIDGLGKHGRVDDAYKLYEKMLDSDQIPNAIVYTSLIRNFFKCGRKEDGHKIYNEMIRLGCSPDLILLNTYMDCIFKAGETEKGRALFQEIKAQGFIPDARSFSVLINGLVKAGFAHESYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGVEVNVIIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYGILIHGLCKIRKFNKAFVFWQEMQKQGLKPNVFTYTTMISGLAKAGNIVEANALFEKFKAKGGVPDSATYNAIIEGLSNANRALDAYRLFEETRSKGCSIHTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHAARSWT 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8932194 8938282 - Tan0011657.2 Tan10g1011 765805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1011 903 SUPERFAMILY TPR-like 368 760 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 756 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Tan10g1011 903 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 406 695 IPR050667 -
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 774 902 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 827 861 IPR002885 -
Tan10g1011 903 Pfam Pentatricopeptide repeat domain 151 209 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Tan10g1011 903 Pfam PPR repeat 341 370 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 690 723 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 305 336 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 552 583 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 724 757 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 514 547 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 794 827 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 585 618 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 654 688 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 445 477 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 375 402 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 759 793 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 479 512 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 201 234 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 830 860 IPR002885 -
Tan10g1011 903 NCBIfam pentatricopeptide repeat 620 653 IPR002885 -
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 212 319 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 93 211 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 664 773 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 403 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 792 826 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 826 875 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 759 805 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 546 595 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 617 665 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 687 735 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 267 316 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 476 522 IPR002885 -
Tan10g1011 903 Pfam PPR repeat family 372 419 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Tan10g1011 903 Pfam PPR repeat 229 261 IPR002885 -
Tan10g1011 903 Pfam PPR repeat 438 467 IPR002885 -
Tan10g1011 903 SUPERFAMILY HCP-like 268 402 - -
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 320 434 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 508 575 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 576 647 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 Gene3D Tetratricopeptide repeat domain 435 507 IPR011990 GO:0005515(InterPro)
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 757 791 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 652 686 IPR002885 -
Tan10g1011 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1011 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1011 Tan-Chr10:8932194 Tan08g0666 Tan-Chr8:6622906 3.60E-06 dispersed
Tan10g1010 Tan-Chr10:8932194 Tan10g1011 Tan-Chr10:8932194 9.10E-18 tandem
Tan10g1011 Tan-Chr10:8932194 Tan10g1012 Tan-Chr10:8932194 9.10E-18 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g302 . . . . . . . . . . . . . . . . . Bhi01g01018 Tan10g1011 . . Hepe05g1445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008580 1 4 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 1 33