Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1033 ATGGCAAATGATGGCGATGGAGGGAAGAACAAGAAGGCTGCCCTCATCGGCGTGTCTTCTCTGTTTCTTGTTGCCATGGTAGTTGCGGTGGCGGTCGGCGTCAACAAGAAAGGCTCCGATGGCATTGGCGGCGGTGGTGGCACGGCGGAGATCTCCACCTCCACGAAAGCGATTAAGGCCCTGTGTCAGCCCACTGATTACCAAGAAACTTGCGAGAAAGCCCTCTCAGAGAGCAATGCCAACACCAGCGACCCTCGTGAGCTAATCAAGGCAGGATTCCACGTTGCTGTTGAGCAAATCAAATCCGCCATTGGAAATTCCAAGACCCTGCAAGATTCCGCCACTGACCCCATGGCCAAGCAAGCGCTCGACGCTTGCGGCGAGCTCATGGACTACGCAATTGACGATCTTTTAATTTCGTTCGACAGAATCGCCGATACTTTTGACATCAACAAAATCGATGATTATGTTGAGGATCTCAAAGTTTGGTTGAGTGGTGCATTGACGTATCAACAAACTTGCTTGGATGGTTTCGAGAATGTGACTGGCGATACAGGGGAAAAGATGACGAATTTGTTGAAGATGTCAAAAGAAATGACAGCCAATGGGCTTGGAATGGTGAGTGAAGTTACTTCCATTATGAGCTCTTTCGGTCTGCCGACGACCGGGCGGCGACTCCTAACAGAGGAATCCAATGAACAAGAGGCAGAGCCGTCGTGGATCAACGACCGACGGGGGCTGCTCCAAGCTACTCCGGGCAACATCAAGGCGGATGTCGTGGTGGCTAAAGACGGCAGTGGAAAGTACAAAACGGTGACTGAAGCCTTACAAGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTATGTTAAGCAAGGAGTTTATCAAGAGCAAGTGATGGTGGACAAAAGTATGAGTTATGTCATGATGATTGGAGATGGCCCAACTAAGACAAAGATCACTGCTAGCAAGAACTTCATTGATGGAACACCCACATTCAAAACCGCTACCTTTTCGGTGATCGGGAGCAACTTCATTGCAAAAGACATGGGGTTCGAGAATGCGGCCGGAGCAGCGAAACACCAGGCCGTGGCACTTCGAGTTCAATCAGACATGTCAATCTTCTACAATTGTCAAATGGACGGCTACCAAGACACTCTATACACGCATGCCCACCGTCAATTCTACAGAGACTGCACCATCACCGGCACCATTGACTTCATCTTTGGCAACGCCGCCGTCGTGTTCCAGAACTGTAAGATCTTTGTGAGGAAGCCAATGGATAATCAACAATGCATCGTCACTGCCCAAGGCCGACTCCAGAAGAAAGAGCCCACTGCCATCATCCTCCAGAACTGCGTCATATCCTCCTCCCCCGAGTTCTTCCCCGTCCGCCATATCAACAAGGCCTACCTCGGGCGTCCATGGAAGGAATATTCAAGAACCATCATCATGCAATCTCAAATCGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGATGGGTGATTTTGCTCTCAACACTCTGTATTACTCAGAGTACAATAACAGAGGACCTGGAGCAGCCACAGACAAACGAGTCAAGTGGAGGGGAATTAAACCAATGACGCCACAGCACGCCGTCGATTTCACCGCTGGCATGTTTATTCGCGGCAATCCCTGGATCAAGCCCACCGGAGTGCCGTACAATGCCGGATTATGA 1707 50.03 MANDGDGGKNKKAALIGVSSLFLVAMVVAVAVGVNKKGSDGIGGGGGTAEISTSTKAIKALCQPTDYQETCEKALSESNANTSDPRELIKAGFHVAVEQIKSAIGNSKTLQDSATDPMAKQALDACGELMDYAIDDLLISFDRIADTFDINKIDDYVEDLKVWLSGALTYQQTCLDGFENVTGDTGEKMTNLLKMSKEMTANGLGMVSEVTSIMSSFGLPTTGRRLLTEESNEQEAEPSWINDRRGLLQATPGNIKADVVVAKDGSGKYKTVTEALQDVPKKSNKTFVIYVKQGVYQEQVMVDKSMSYVMMIGDGPTKTKITASKNFIDGTPTFKTATFSVIGSNFIAKDMGFENAAGAAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPMDNQQCIVTAQGRLQKKEPTAIILQNCVISSSPEFFPVRHINKAYLGRPWKEYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLYYSEYNNRGPGAATDKRVKWRGIKPMTPQHAVDFTAGMFIRGNPWIKPTGVPYNAGL 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9186330 9188120 - Tan0017977.1 Tan10g1033 765827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1033 568 FunFam Pectinesterase 252 568 - -
Tan10g1033 568 PANTHER PECTINESTERASE 12 559 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan10g1033 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 210 IPR035513 -
Tan10g1033 568 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Tan10g1033 568 Gene3D - 252 568 IPR012334 -
Tan10g1033 568 NCBIfam pectinesterase inhibitor domain 54 206 IPR006501 GO:0004857(InterPro)
Tan10g1033 568 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Tan10g1033 568 FunFam Pectinesterase 54 211 - -
Tan10g1033 568 CDD PMEI-like_3 60 212 - -
Tan10g1033 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Tan10g1033 568 Pfam Pectinesterase 258 554 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan10g1033 568 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857(InterPro)
Tan10g1033 568 SMART PMEI_2 53 206 IPR006501 GO:0004857(InterPro)
Tan10g1033 568 SUPERFAMILY Pectin lyase-like 256 567 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1033 K01051 - - csv:101212686 940.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0150 Tan-Chr9:7607219 Tan10g1033 Tan-Chr10:9186330 1.70E-163 dispersed
Tan09g0151 Tan-Chr9:7766987 Tan10g1033 Tan-Chr10:9186330 4.80E-131 dispersed
Tan10g1033 Tan-Chr10:9186330 Tan11g2250 Tan-Chr11:63415248 1.20E-137 dispersed
Tan05g2710 Tan-Chr5:78979028 Tan10g1033 Tan-Chr10:9186330 2.00E-116 transposed
Tan11g1660 Tan-Chr11:16026391 Tan10g1033 Tan-Chr10:9186330 2.10E-113 transposed
Tan10g1033 Tan-Chr10:9186330 Tan06g2699 Tan-Chr6:79431027 3.20E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g259 . . . . . . . . Cmo08g01213 Cmo17g00328 Cma06g01533 . . . Sed02g1163 . . Bhi01g01041 Tan10g1033 Cmetu06g0197 Lac11g0857 Hepe05g1419 . Lcy11g1391 Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 Lsi05g01558 . Chy11g01528 Cme06g00752 . . . . Bpe05g00827 . . . . Cmo06g01513 . Cma08g01239 Cma17g00341 . . . . . . . . . . . Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000192 6 4 7 5 3 4 2 4 4 4 4 4 18 4 4 18 4 8 1 4 4 5 16 7 9 3 8 10 5 3 182