Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1050 ATGTCTACGGCCAGTTCGAGCTCTGTAAGGAAACCAAGTGAAGCTGTTCCCGACCAGTTTCCGGCGGGCCTTCGTGTTCTGGTTGTTGATGATGATCCGACCTGCCTTATGATCTTGGAGAAGATGCTTCGTATTTGTCGCTATGAAGTAACAAAATGTAGTCGAGCGGAGGATGCGCTGTCGCTTCTCAGACGGTACAAAAACGGGTTCGATGTCGTTTTGAGTGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAGTACATTGGACTGGAAATGGACTTGCCTGTGATCATGATGTCGGTGGACGATGGGAAAAATGTTGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTGATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCACGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGTGTGGAGGATGTAGATCGGCAGCAAAAAACAAATGAAGAAGCAGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAAGATGACGTAGAAGATGCCGAGGAGAGGGATGACTCATCAACCCTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTCCATCAGCAGTTCGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACCAGAGAAAATGTTGCCAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATGACACAGCACCAGAGTAATCTGAACAACACATTCATGAGTGCCCAAGATGCATTTGGTCCGTCATTGAACGGACTTGATCTTCAAACTCTCGCTGCTGCTGGTCAGCTCCAGCCTCAAAGCCTTGCTACGCTCCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCGGGCATGCCTATGCCTCTTGTTGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTTGGTGATGGACAACAGCCACATTTGAACGGTAGTAAACCAATAAATCTACTTCACGGAATTCCAACAACAATGGAGCCAAAACAACTAGCTAATCTGCAGCATTCTGCACAATCTCATGGAAACATGACAATGCAAGTTAGCGCCCAAGGGGGCCAAACTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTAGACCACAGATCCTAAACGAAAGTACCGCAACTAGCGTGACAAGGCTTCCACCAACAATACAGCAGTCAATTTTGCCGAATGGAACTACCGGTGCGGTTTTGGCTAGGAATGAATTCGCCAATAATAGTAGAGGTGGAGGGTACAATCTAGTTTCACCAGCTTCAACAATGTTAAATTTTCCCATGAACCAAACTGCTGAACTGCCTGGTAACAGTTTTCCTCTTCAAAGTAACCCAGGAATGTCAAGTATTGTACCGAAGGGAAGATTTCCAGATGAGGTTAACTCAGACATTAAAGGATCTGACGGTTTTGTGCCAAGCTATGATATGTTTAGGGATCTGCATCCCCAGAAGCCAGATTGGGACTTGCAACATGTAGGTGTGACCTTCGATGCGTCTCATCAAGGTAGTCTTGACATTTCATCCTCAGCTTTTGCTCATCAAGGATATGCCTCTAGCCAACAAAATGGACAAAACAGGAACACATCTACGGCAGGCAAGGCCACGTTCTTGTTGGAAGAAGGAAGTGAGAATGGGAATGCACAAAGTATGGGTCAACAACTCAACCCTATTTTCGTTGACGGTTCAGTGAGAGTTAAAGCGGAAAGAGCTTCTGAAACTAGCAGTCAAACTGACCTTTTTTCTGAACACTTTGGTCAGGAGGACCTGATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCATTACAACAGCTGAAAGTGAGTTGGAATGGGTATTTCATCATAATACTCCTGTTTAG 1983 45.28 MSTASSSSVRKPSEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSLLRRYKNGFDVVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKTNEEADYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGMTQHQSNLNNTFMSAQDAFGPSLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPINLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGGQTSSQLMQTPQPQARPQILNESTATSVTRLPPTIQQSILPNGTTGAVLARNEFANNSRGGGYNLVSPASTMLNFPMNQTAELPGNSFPLQSNPGMSSIVPKGRFPDEVNSDIKGSDGFVPSYDMFRDLHPQKPDWDLQHVGVTFDASHQGSLDISSSAFAHQGYASSQQNGQNRNTSTAGKATFLLEEGSENGNAQSMGQQLNPIFVDGSVRVKAERASETSSQTDLFSEHFGQEDLMSALLKQQQGSITTAESELEWVFHHNTPV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9414877 9419326 + Tan0017519.1 Tan10g1050 765844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1050 660 SUPERFAMILY CheY-like 23 148 IPR011006 -
Tan10g1050 660 CDD REC_typeB_ARR-like 26 140 - -
Tan10g1050 660 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Tan10g1050 660 FunFam Two-component response regulator 199 262 - -
Tan10g1050 660 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Tan10g1050 660 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Tan10g1050 660 PIRSF RR_ARR_type-B 3 651 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Tan10g1050 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 318 IPR045279 GO:0009736(InterPro)
Tan10g1050 660 Gene3D - 24 161 - -
Tan10g1050 660 MobiDBLite consensus disorder prediction 151 166 - -
Tan10g1050 660 MobiDBLite consensus disorder prediction 151 200 - -
Tan10g1050 660 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Tan10g1050 660 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Tan10g1050 660 Gene3D - 200 262 - -
Tan10g1050 660 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677(InterPro)
Tan10g1050 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Tan10g1050 660 MobiDBLite consensus disorder prediction 179 200 - -
Tan10g1050 660 FunFam Two-component response regulator 24 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0760 Tan-Chr6:6006920 Tan10g1050 Tan-Chr10:9414877 4.30E-31 dispersed
Tan06g2215 Tan-Chr6:72585549 Tan10g1050 Tan-Chr10:9414877 4.50E-41 dispersed
Tan07g1932 Tan-Chr7:71099922 Tan10g1050 Tan-Chr10:9414877 3.40E-30 dispersed
Tan07g1933 Tan-Chr7:71099922 Tan10g1050 Tan-Chr10:9414877 3.40E-30 dispersed
Tan08g1295 Tan-Chr8:45121274 Tan10g1050 Tan-Chr10:9414877 2.40E-20 dispersed
Tan09g1541 Tan-Chr9:67275508 Tan10g1050 Tan-Chr10:9414877 1.00E-85 dispersed
Tan09g1542 Tan-Chr9:67275508 Tan10g1050 Tan-Chr10:9414877 1.00E-85 dispersed
Tan09g1676 Tan-Chr9:68390269 Tan10g1050 Tan-Chr10:9414877 4.90E-41 dispersed
Tan10g1050 Tan-Chr10:9414877 Tan10g1051 Tan-Chr10:9414877 0.00E+00 tandem
Tan01g0294 Tan-Chr1:2493276 Tan10g1050 Tan-Chr10:9414877 3.00E-49 transposed
Tan02g2150 Tan-Chr2:90886131 Tan10g1050 Tan-Chr10:9414877 7.10E-80 transposed
Tan06g2115 Tan-Chr6:70257542 Tan10g1050 Tan-Chr10:9414877 7.90E-40 transposed
Tan10g1050 Tan-Chr10:9414877 Tan06g2722 Tan-Chr6:79583258 1.60E-213 wgd
Tan10g1050 Tan-Chr10:9414877 Tan06g0759 Tan-Chr6:5946825 8.90E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28553 PF00072 Response_reg 1.10E-22 CL0304 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1050 K14491 - csv:101209013 1224.15