Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1053 ATGATGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATGTCCGGCAAGAACTCCGGCGGGGTTTCGTCGGAAGAGAGTCAAGTGAACGAGCAGAACAAGAAGACCTGTGCTGACTGTGGCACTTCGAAAACCCCTTTATGGAGAGGCGGCCCGGCTGGTCCAAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGGAGGGCGATTTTGGGGTTGAGCAAAGGAGTTGTTGAGGATAATAAGAAGAGCAAAAGAAGCAGTAGCAATATTAGCAATAATAGTAAGTTGAGAGATAGTTTGAAACAGAGACTTTTGGCTTTGGGAAGAGAGGTTTTGATGCAGAGATCTCCTGTTGAGAGGCAAAGGAAGAAGTTGGGAGAAGAAGAACAAGCTGCTGTTCTTTTGATGGCTCTCTCCTATGGCTCTGTTTATGCTTAA 453 47.02 MMMDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDNKKSKRSSSNISNNSKLRDSLKQRLLALGREVLMQRSPVERQRKKLGEEEQAAVLLMALSYGSVYA 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9461069 9462676 + Tan0020060.1 Tan10g1053 765847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1053 150 CDD ZnF_GATA 37 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1053 150 MobiDBLite consensus disorder prediction 15 41 - -
Tan10g1053 150 Gene3D - 32 134 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan10g1053 150 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1053 150 MobiDBLite consensus disorder prediction 78 100 - -
Tan10g1053 150 SMART GATA_3 32 89 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1053 150 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1053 150 PANTHER OS01G0976800 PROTEIN 17 150 - -
Tan10g1053 150 MobiDBLite consensus disorder prediction 1 55 - -
Tan10g1053 150 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1053 150 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1053 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1982 Tan-Chr3:74890821 Tan10g1053 Tan-Chr10:9461069 1.20E-11 dispersed
Tan09g0110 Tan-Chr9:5202867 Tan10g1053 Tan-Chr10:9461069 8.50E-20 dispersed
Tan09g0111 Tan-Chr9:5202867 Tan10g1053 Tan-Chr10:9461069 8.50E-20 dispersed
Tan09g1149 Tan-Chr9:63852090 Tan10g1053 Tan-Chr10:9461069 5.30E-13 dispersed
Tan10g1053 Tan-Chr10:9461069 Tan10g1524 Tan-Chr10:23640838 1.90E-08 dispersed
Tan10g1053 Tan-Chr10:9461069 Tan06g2729 Tan-Chr6:79607041 7.20E-37 wgd
Tan10g1053 Tan-Chr10:9461069 Tan06g0752 Tan-Chr6:5864376 2.20E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g110 Blo01g00058 . . Bda08g00307 Bpe04g01105 Bpe14g01108 Bma04g01139 . . Cmo17g00342 Cma06g01551 Cma14g01600 Car06g01316 Car14g01415 Sed02g1148 Cpe08g00163 Cpe03g01341 Bhi01g01062 Tan10g1053 Cmetu06g2475 Lac11g0907 Hepe05g1401 . . Cla06g00446 Cam06g0474 Cec06g0479 Cco06g0477 Clacu06g0460 Cmu06g0461 Cre06g1236 . . . . . . Chy11g01548 Cme06g00767 Blo02g00487 . Bda11g00513 Bda13g00207 Bpe05g00821 Bpe13g00684 . Bma06g01481 Sed09g0269 . Cmo14g01633 . Cma17g00353 . Car17g00324 Cpe12g00302 . Bhi12g01901 Tan06g2729 Cmetu11g0446 Lac11g0907 Hepe03g0066 . Lcy12g0779 Cla05g00682 Cam05g0749 Cec05g0755 Cco05g0755 Clacu05g0741 Cmu05g0706 Cre05g0780 Lsi09g01468 Csa03g01500 Chy06g00738 Cme11g02058
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001736 5 2 2 2 4 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 4 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28555 PF00320 GATA 9.00E-17 CL0167 Tan TF