Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1087 ATGGAGAAGAAATTTGAAGACTCATTGATGGGGTCGGAAAATTCCACCGGAATTTACTCTCCGGCGTTATTTTCCGACGAGTTTCCGGGCAGTGGTGGTTTTAGTTTTTCCGGTATGTTCGACATGCCATGTGATGATCGTAAAGCTTCTTGTTCTTCTAATTCTTCCTTTGATTTGTTTGGTGGTGGAATTGGAAATATCCATGATTTTTATAATCCTTCTTCTTTGTTCGATTTGCTTACTACGGCGGCGCCGCCGATTTCCTCGCCGGCCTCCACCGTGCCGGAGTCATCAGAGGTGCTTAATGCTCCGGCCACGCCTAATTCTTCCTCGGTTTCTAATTCCTCCTCCAATGAAGCTGCTGCCATTGAAGAGGTTGACAAGATTAACAACACTGAAAAGACTTCTAAAGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGACGGTTACCGGTGGCGGAAGTACGGCCAAAAGGCCGTGAAGAATAGTCCTTATCCCAGAAGCTATTATCGTTGCACTACGGCAGGGTGCGGTGTAAAGAAGAGGGTGGAGAGGTCGTCTAACGACCATTCGATCGTCATCACGACGTACGAAGGCCAACACACCCACCAAAGTCCGGTAATGCCACGAGGGAGCATGAGAATCCTACCGGAATCCACCAACTCCCTCGTCGTCGATGACGCCACCGCCACCGCCACCACCACCACCGGACTTCTATTCCAACACAACACTCCCCAACCCTACATGTACAGCTCTCCGCCACCATTTCTAACAATCAACTCATCGTCGCCGAGTCCCCGTCCTCCCTCCTCCCTCCCACCGCCATCGCCATCGCCATCGTCGTCTCAAGCTTCCTTGCTCCGAGATCATGGGCTTCTGCAGGATTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGAATGA 993 49.45 MEKKFEDSLMGSENSTGIYSPALFSDEFPGSGGFSFSGMFDMPCDDRKASCSSNSSFDLFGGGIGNIHDFYNPSSLFDLLTTAAPPISSPASTVPESSEVLNAPATPNSSSVSNSSSNEAAAIEEVDKINNTEKTSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSNDHSIVITTYEGQHTHQSPVMPRGSMRILPESTNSLVVDDATATATTTTGLLFQHNTPQPYMYSSPPPFLTINSSSPSPRPPSSLPPPSPSPSSSQASLLRDHGLLQDLVPLQMRKEPKDEQNE 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10214516 10216376 + Tan0012224.1 Tan10g1087 765881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1087 330 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 231 IPR044810 GO:0003700(InterPro)
Tan10g1087 330 SUPERFAMILY WRKY DNA-binding domain 157 225 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1087 330 MobiDBLite consensus disorder prediction 278 299 - -
Tan10g1087 330 ProSiteProfiles WRKY domain profile. 160 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1087 330 MobiDBLite consensus disorder prediction 88 121 - -
Tan10g1087 330 SMART WRKY_cls 165 224 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1087 330 Pfam WRKY DNA -binding domain 166 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1087 330 MobiDBLite consensus disorder prediction 264 330 - -
Tan10g1087 330 MobiDBLite consensus disorder prediction 88 151 - -
Tan10g1087 330 Gene3D WRKY domain 149 226 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g1087 330 FunFam WRKY transcription factor 57 151 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2778 Tan-Chr6:79967303 Tan10g1087 Tan-Chr10:10214516 1.00E-51 dispersed
Tan10g1087 Tan-Chr10:10214516 Tan11g0132 Tan-Chr11:1311187 2.00E-26 dispersed
Tan10g1087 Tan-Chr10:10214516 Tan06g0714 Tan-Chr6:5453674 1.90E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28558 PF03106 WRKY 5.10E-26 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1087 - - - 0.0