Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1120 ATGGCGGCTAAGAAACTCTGTGAAACCTTCTCCAAGAGCCTGATCGACGAGGTTCAGAAATGGGGTTGTATGAAACAGACTGGGGTTAGCTTGAGATACATGATGGAGTTTGGTTTGAAGCCCACTGCAAAGAATTTGCTCATTTCTGCTCAGTTTCTTCACAAGGAGCTTCCAATTCGGATTGCTAGAAGAGCTATTGAACTTGAGAATCTTCCCTATGGCCTCTCTATGAAACCTGCTGTTTTGAAGGTTCGTGACTGGTATTTGGACTCTTTCCGTGACCTTCGGTCCTTTCCTGAGATAAAGTGCTCAGATGATGAAAAGGAGTTTACACAAATGATAAAGGCAATTAAGGTGAGACATAACAATGTGGTTCCAATGATGGCTTTAGGTGTTCAACAGCTGAAGAAAGGTCTGGGTTTGAATAATATTGGGTATCAAGATCTTCATGAGATTCATCAGTTTCTGGATCGCTTCTACATGTCAAGAATTGGGATTCGCATGCTCATTGGGCAGCATGTGGAATTACACAATCCCAATCCCCCTCCTGACTGTGTAGGATATATACACACGAAAATGTCCCCTGTGGAGGTTGCGCAGACCGCCAGTGAGGATGCCCGTGCGATCTGTTTACGTGAGTATGGAAGTGCCCCTAACATCAAAATCTATGGAGATCCCAGTTTTACATTTCCTTACGTTCCAACGCACTTGCATCTTATGGTCTTTGAGTTGGTTAAGAACTCATTACGCGCCGTGCAAGAGCGTTTCATGGATTCTGATAAAGTTGCTCCTCCTGTTAGAATTATAGTTGCTGATGGAATTGAGGATGTCACTATTAAGGTTATTGTTCTTGTCAATCACTAG 864 43.29 MAAKKLCETFSKSLIDEVQKWGCMKQTGVSLRYMMEFGLKPTAKNLLISAQFLHKELPIRIARRAIELENLPYGLSMKPAVLKVRDWYLDSFRDLRSFPEIKCSDDEKEFTQMIKAIKVRHNNVVPMMALGVQQLKKGLGLNNIGYQDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPDCVGYIHTKMSPVEVAQTASEDARAICLREYGSAPNIKIYGDPSFTFPYVPTHLHLMVFELVKNSLRAVQERFMDSDKVAPPVRIIVADGIEDVTIKVIVLVNH 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10848677 10852471 + Tan0003542.2 Tan10g1120 765914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1120 287 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 16 180 IPR036784 -
Tan10g1120 287 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 151 281 IPR036890 -
Tan10g1120 287 Gene3D - 5 182 IPR036784 -
Tan10g1120 287 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase, mitochondrial 6 184 - -
Tan10g1120 287 Gene3D - 192 282 IPR036890 -
Tan10g1120 287 PANTHER PYRUVATE DEHYDROGENASE KINASE 11 281 IPR039028 GO:0004672(InterPro)|GO:0004740(PANTHER)|GO:0005739(PANTHER)|GO:0006468(PANTHER)|GO:0010906(PANTHER)
Tan10g1120 287 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 29 190 IPR018955 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1120 K00898 - - csv:101213546 540.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1119 Tan-Chr10:10848677 Tan10g1120 Tan-Chr10:10848677 2.50E-163 tandem
Tan10g1120 Tan-Chr10:10848677 Tan10g1121 Tan-Chr10:10848677 4.20E-166 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g256 . Blo12g00373 Bda03g00837 . Bpe04g00792 . Bma04g00735 . . . . Cma14g01560 . Car14g01375 . . Cpe03g01304 Bhi01g01126 Tan10g1120 . . Hepe05g1346 . . . . . . . . . Cone14ag0680 Cone15ag0692 . . Lsi05g01389 . . Cme06g00829 . . . . . . . . . . Cmo14g01595 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003282 1 3 1 1 1 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 1 1 2 1 2 3 2 49