Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1142 ATGGCCAGAGCTCCCATCCACACTCCGGCCAACTTTCTCACCTCTCGAAGTCTCGCATCGTGCCACTTGGGCCGCCATGGCTGCCTCCGCTCGCCATTTCTGAGCCAGACAACGCCAGTTCCCGCAAGCAAGCTGGTGATTGTTGGTGGTTGTCTAATCGCCGGTTACGCTCGCAAATCGGTGGATTCTGCTGGAGTTCACCAGCTCACTGATGATGACGACTTTACCGTTTCTTCCTCCGACGAATTTCATTGCGATGGAGGCGAGATAGTTGATGATGGAGGTATTAAGACTTCAGGAACACGTAGAAGGATATCTATTGGAAGTTTTGGAAGATTGAAAACTCAAAAAGTTAAAGCAATTGTGACTAAAGGGGCTAGGAGAAATGAAGAATTTAGAGATGATGCCCGTGTACCAACTCCTAAAAATGGATCATCTCATATATCTGATCGTCCACATTCTAAAGTTAAACCTCTTGGAGAAAAGAAGAGGGTAAATGCCGTAAAAAATGCAGAAACAATTTCAAGACCATCTGAACTGCAAGATAGAGATAGACATCACAGAACTGCCCCCAATTTATCAAGACCCGAGCAATTAGTTCCGGCTGGTTCTGCTGCTTACTTCAGAGGATGGGGCTCTAGAGGGCACTACGGTTCTGAGTATGAACCAACCCAGCCACAACAGAAATTTTCCTCAGAGAAGGGCTTTTTTAGCAGAAAGTCATTTAAAGATCTTGGGTGCGCTGAATATATGATTGAATCATTGAGGAGGCAGAATTTCCTACGTCCTTCACAGATTCAGGCCAAGGCATTTGCATCAGTTATTGAAGGAAAGAGTTGTATCATTTCTGATCAAAGTGGATCTGGTAAGACATTAGCATATCTTGCACCATTAATCCAGCGTCTGAGGCAGGAAGAACTTGAAGGACTTCGAAAATCTTCTTCACAAAGTCCTCAAATTGTTATCATTGTGCCGACAGCAGAATTGGCTTCTCAGGTCTTAAGTAATTGCCGGTCCATTTCAAAATTTGGGATGCCATTTAGGTCCATGGTTGTGACAGGCGGTTTCCGGCAGAGGACTCAACTTGAAAATCTACAGGAAGGTGTTGATGTTCTAATAGCAACTCCTGGTCGTTTGATGCTTCTACTAAAGGAAGGCTTCTTGCAGTTATCAAATCTAAGATGTGCTGTAATGGACGAGGTAGACATCCTTTTTAATGACGAGGATTTTGAAGTTGCACTGCAGACTTTGATGAAATCTGCACCTGTTAATACACAATATCTATTTGTGACTGCAACTTTACCGGTTGACATATATAATACATTAGTGGAAAATTTTCCTGATTGTGAAGTGATCATGGGACCTGGAGTTCACCGGATAAGTCCTTTCCTTGAAGAGGTTCTTGTAGATTGTAGTGGTGAAGGTGAACAGAACAAAACACCAGATGCTGCTTTCTTGAATAAGAAAGATGCCCTCCTGCAGATTGCAGAAGGATCTCCCGTCTCGAAAACTATTGTTTTCTGTAACAAGATTGAAACATGTAGAAGAGTTGAAAACGCGTTGCAGCGTTTTGATAAAAAAGGCAGCCAGTTGCAAGTCTTTCCATTTCATGCTGCCCTAGCAAGAGAGTCACGGCTTTCAAATATGGAGGCATTCACCAATTCTCATTCTAACCAAGTATCCCAGTTCTTGGTTTGCACTGATAGGGCATCACGTGGAATTGATTTTCCAAATGTGGATCATGTCATACTCTTTGACTTCCCCCGTGATCCTAGTGAGTATGTTCGTCGTGTGGGAAGAACTGCCAGAGGTGCTACAGGAAAAGGAAAAGCCTTCATCTTCGTGGTCGGAAAGCAGGTGTCCCTTGCGCGAAGGATAATTGAAAGAAACAGGAAAGGTCACCCGTTACATGATGTGCCATCCGCTTATGAGCTTACATTCTAA 1944 43.67 MARAPIHTPANFLTSRSLASCHLGRHGCLRSPFLSQTTPVPASKLVIVGGCLIAGYARKSVDSAGVHQLTDDDDFTVSSSDEFHCDGGEIVDDGGIKTSGTRRRISIGSFGRLKTQKVKAIVTKGARRNEEFRDDARVPTPKNGSSHISDRPHSKVKPLGEKKRVNAVKNAETISRPSELQDRDRHHRTAPNLSRPEQLVPAGSAAYFRGWGSRGHYGSEYEPTQPQQKFSSEKGFFSRKSFKDLGCAEYMIESLRRQNFLRPSQIQAKAFASVIEGKSCIISDQSGSGKTLAYLAPLIQRLRQEELEGLRKSSSQSPQIVIIVPTAELASQVLSNCRSISKFGMPFRSMVVTGGFRQRTQLENLQEGVDVLIATPGRLMLLLKEGFLQLSNLRCAVMDEVDILFNDEDFEVALQTLMKSAPVNTQYLFVTATLPVDIYNTLVENFPDCEVIMGPGVHRISPFLEEVLVDCSGEGEQNKTPDAAFLNKKDALLQIAEGSPVSKTIVFCNKIETCRRVENALQRFDKKGSQLQVFPFHAALARESRLSNMEAFTNSHSNQVSQFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRVGRTARGATGKGKAFIFVVGKQVSLARRIIERNRKGHPLHDVPSAYELTF 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11181924 11190998 - Tan0015237.1 Tan10g1142 765936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1142 647 Pfam Helicase conserved C-terminal domain 488 603 IPR001650 -
Tan10g1142 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 616 IPR027417 -
Tan10g1142 647 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 111 644 - GO:0003729(PANTHER)
Tan10g1142 647 MobiDBLite consensus disorder prediction 148 162 - -
Tan10g1142 647 MobiDBLite consensus disorder prediction 176 192 - -
Tan10g1142 647 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 647 IPR001650 -
Tan10g1142 647 SMART ultradead3 259 467 IPR014001 -
Tan10g1142 647 MobiDBLite consensus disorder prediction 175 195 - -
Tan10g1142 647 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 240 268 IPR014014 GO:0003724(InterPro)
Tan10g1142 647 Gene3D - 478 643 IPR027417 -
Tan10g1142 647 CDD SF2_C_DEAD 487 615 - -
Tan10g1142 647 CDD DEADc 251 452 - -
Tan10g1142 647 MobiDBLite consensus disorder prediction 129 162 - -
Tan10g1142 647 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 271 452 IPR014001 -
Tan10g1142 647 Pfam DEAD/DEAH box helicase 265 437 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan10g1142 647 Gene3D - 220 455 IPR027417 -
Tan10g1142 647 SMART helicmild6 515 605 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1142 K13179 - - csv:101214337 1078.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3061 Tan-Chr1:77836916 Tan10g1142 Tan-Chr10:11181924 7.80E-48 dispersed
Tan10g0256 Tan-Chr10:2281674 Tan10g1142 Tan-Chr10:11181924 1.50E-33 dispersed
Tan10g1142 Tan-Chr10:11181924 Tan01g5160 Tan-Chr1:116733499 1.40E-28 dispersed
Tan10g1142 Tan-Chr10:11181924 Tan01g1428 Tan-Chr1:14214741 1.20E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011458 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 31