Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1178 ATGGAGAAGGAGTTCTTCATGAACGATGGATGCAGTCTTTATGGGATGGAAATCCAACCTAATGAGCTGAATTCGAGTGTGTTGTTCAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTATCTTCTCCGGCGAATTCCCACGCCGGAACTGTAATCGGCGGTGGCGGTGGCGGTGGCGAGAATTTGATGATGCGGGAATTGATCGGAAGGCTTGGGAGCATTTGTAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAATAACAGTACCAACACTTCTTGTTACAATACGCCTTTGAATTCCCCTCCGAAGCTGAATTTGTCGTCGATCATGGAGTCTCAGATGAGAGGGAATTTATCAGTCGGTGGCAATTTGATCCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGGGCTGCGAGATTGTCTTGCTTTGGGAACAGAAATCTTGCGGTGAATGGGCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATGGCTGGAGCTGGAGTGGAAGCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAATGTTGGTGGAATTGGATCTCAAATGGGAGTTCAGGAAGGCAACCAAAGCCCAGTGCAGAAGGGGAATTCAATGCCTAACAAGAAAGTACTGAACAGGTTCTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGGGAGGGATCTTCGGTTTCGGAGCAGGTTACAGGTGGGGAATTGAGTTTCAAAGGTAAAGCTGAAGTCAACACTAGGAAAAGGAAATCAGCTCACACTGGTGAAGCAAAGGATGTGAAGGCTGCAGGAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGAGGAAGTTTGTATGAAAGAGATGGATGCTGCAAAGGGGAAGGCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGGGGTCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTCCGGCGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAGCGCCAAGTTGAGTTTCTTTCGATGAAATTGGCAACTGTCAATCCAAGGATGGATTTTAACATGGAGACCCTTCTGCCCAAGGATATCTTCAAAGGTCCTGGTTCGTCACCGCATACGATTTACCCCATGGATTCATCTGTGCCCACATTCGCATATGAATATCAATCTATGCACATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAAAAGCAATTCCCCATCGCCTCAGCAAGTGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGTGGGTATAGCGAAGTTGGGAATGGAATCCAAATTTCAAAGTTCTGGGAGGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAGCTACAAAATGTTAATGCAGGCTCTATGACTGCTGATGAGATGAAAAGTGAATTGTAA 1674 44.98 MEKEFFMNDGCSLYGMEIQPNELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIGGGGGGGENLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGNLSVGGNLIPHHQNLAPFSADPGFAERAARLSCFGNRNLAVNGQLGSNETQELSNRSMAGAGVEAGKLSRVSSNKSFNVGGIGSQMGVQEGNQSPVQKGNSMPNKKVLNRFSRSSTPENAGDSREGSSVSEQVTGGELSFKGKAEVNTRKRKSAHTGEAKDVKAAGENHESNGKKIKPEEVCMKEMDAAKGKAEAKDGTKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLLPKDIFKGPGSSPHTIYPMDSSVPTFAYEYQSMHMPPLHSGISNGTEKQFPIASASDVMQRNLSGQMPSGYSEVGNGIQISKFWEDELHTVVQMGYGQNQLQNVNAGSMTADEMKSEL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11869697 11872827 - Tan0001791.1 Tan10g1178 765972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1178 557 MobiDBLite consensus disorder prediction 212 355 - -
Tan10g1178 557 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 434 IPR036638 GO:0046983(InterPro)
Tan10g1178 557 Pfam Helix-loop-helix DNA-binding domain 368 415 IPR011598 GO:0046983(InterPro)
Tan10g1178 557 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 414 IPR011598 GO:0046983(InterPro)
Tan10g1178 557 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 148 511 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan10g1178 557 FunFam Basic helix-loop-helix transcription factor 361 434 - -
Tan10g1178 557 MobiDBLite consensus disorder prediction 212 267 - -
Tan10g1178 557 Gene3D - 361 435 IPR036638 GO:0046983(InterPro)
Tan10g1178 557 MobiDBLite consensus disorder prediction 275 333 - -
Tan10g1178 557 CDD bHLH_AtBPE_like 354 439 - -
Tan10g1178 557 MobiDBLite consensus disorder prediction 334 348 - -
Tan10g1178 557 SMART finulus 370 420 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1302 Tan-Chr5:15486171 Tan10g1178 Tan-Chr10:11869697 1.40E-36 dispersed
Tan06g1211 Tan-Chr6:12663433 Tan10g1178 Tan-Chr10:11869697 4.60E-64 dispersed
Tan06g1212 Tan-Chr6:12663433 Tan10g1178 Tan-Chr10:11869697 1.60E-56 dispersed
Tan09g1547 Tan-Chr9:67332375 Tan10g1178 Tan-Chr10:11869697 3.90E-16 dispersed
Tan09g2179 Tan-Chr9:71866654 Tan10g1178 Tan-Chr10:11869697 1.30E-39 dispersed
Tan10g1178 Tan-Chr10:11869697 Tan10g1180 Tan-Chr10:11869697 5.60E-284 dispersed
Tan10g1178 Tan-Chr10:11869697 Tan10g1179 Tan-Chr10:11869697 5.60E-284 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28565 PF00010 HLH 1.20E-05 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1178 - - - 0.0