Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1180 ATGGAGAAGGAGTTCTTCATGAACGATGGATGCAGTCTTTATGGGATGGAAATCCAACCTAATGAGCTGAATTCGAGTGTGTTGTTCAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTATCTTCTCCGGCGAATTCCCACGCCGGAACTGTAATCGGCGGTGGCGGTGGCGGTGGCGAGAATTTGATGATGCGGGAATTGATCGGAAGGCTTGGGAGCATTTGTAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAATAACAGTACCAACACTTCTTGTTACAATACGCCTTTGAATTCCCCTCCGAAGCTGAATTTGTCGTCGATCATGGAGTCTCAGATGAGAGGGAATTTATCAGTCGGTGGCAATTTGATCCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGGGCTGCGAGATTGTCTTGCTTTGGGAACAGAAATCTTGCGGTGAATGGGCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATGGCTGGAGCTGGAGTGGAAGCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAATGTTGGTGGAATTGGATCTCAAATGGGAGTTCAGGAAGGCAACCAAAGCCCAGTGCAGAAGGGGAATTCAATGCCTAACAAGAAAGTACTGAACAGGTTCTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGGGAGGGATCTTCGGTTTCGGAGCAGGTTACAGGTGGGGAATTGAGTTTCAAAGGTAAAGCTGAAGTCAACACTAGGAAAAGGAAATCAGCTCACACTGGTGAAGCAAAGGATGTGAAGGCTGCAGGAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGAGGAAGTTTGTATGAAAGAGATGGATGCTGCAAAGGGGAAGGCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGGGGTCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTCCGGCGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAGCGCCAAGTTGAGTTTCTTTCGATGAAATTGGCAACTGTCAATCCAAGGATGGATTTTAACATGGAGACCCTTCTGCCCAAGGATATCTTCAAAGGTCCTGGTTCGTCACCGCATACGATTTACCCCATGGATTCATCTGTGCCCACATTCGCATATGAATATCAATCTATGCACATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAAAAGCAATTCCCCATCGCCTCAGCAAGTGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGTGGGTATAGCGAAGTTGGGAATGGAATCCAAGTAAATTGCTAA 1566 45.27 MEKEFFMNDGCSLYGMEIQPNELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIGGGGGGGENLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGNLSVGGNLIPHHQNLAPFSADPGFAERAARLSCFGNRNLAVNGQLGSNETQELSNRSMAGAGVEAGKLSRVSSNKSFNVGGIGSQMGVQEGNQSPVQKGNSMPNKKVLNRFSRSSTPENAGDSREGSSVSEQVTGGELSFKGKAEVNTRKRKSAHTGEAKDVKAAGENHESNGKKIKPEEVCMKEMDAAKGKAEAKDGTKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLLPKDIFKGPGSSPHTIYPMDSSVPTFAYEYQSMHMPPLHSGISNGTEKQFPIASASDVMQRNLSGQMPSGYSEVGNGIQVNC 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11869697 11872827 - Tan0001791.3 Tan10g1180 765974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1180 521 MobiDBLite consensus disorder prediction 212 355 - -
Tan10g1180 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 414 IPR011598 GO:0046983(InterPro)
Tan10g1180 521 FunFam Basic helix-loop-helix transcription factor 361 434 - -
Tan10g1180 521 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 148 482 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan10g1180 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 434 IPR036638 GO:0046983(InterPro)
Tan10g1180 521 MobiDBLite consensus disorder prediction 212 267 - -
Tan10g1180 521 Pfam Helix-loop-helix DNA-binding domain 368 415 IPR011598 GO:0046983(InterPro)
Tan10g1180 521 Gene3D - 361 435 IPR036638 GO:0046983(InterPro)
Tan10g1180 521 MobiDBLite consensus disorder prediction 275 333 - -
Tan10g1180 521 CDD bHLH_AtBPE_like 354 439 - -
Tan10g1180 521 MobiDBLite consensus disorder prediction 334 348 - -
Tan10g1180 521 SMART finulus 370 420 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1178 Tan-Chr10:11869697 Tan10g1180 Tan-Chr10:11869697 5.60E-284 dispersed
Tan10g1180 Tan-Chr10:11869697 Tan11g1640 Tan-Chr11:15877923 1.20E-41 dispersed
Tan10g1179 Tan-Chr10:11869697 Tan10g1180 Tan-Chr10:11869697 2.10E-285 tandem
Tan10g1180 Tan-Chr10:11869697 Tan10g1181 Tan-Chr10:11869697 7.40E-238 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28567 PF00010 HLH 1.10E-05 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1180 - - - 0.0