Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1193 ATGGAGAAGGACAAACCCCAGAGCCATTCTGGTGGATTTCTACCCCCATCGAGTCGTTACTCAGGTCTTTCACCAACTGGAAGCAGTTTCAATGGAAAATCTGAGGCAACCTCATCTTCAATGTCGCTTCCTCCAATGGCTTCGGGTGCTAATTCCGATTCGAGTCAATTCAGTCGTGGAATGTCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCAAGAAATATTGGTCACAGACGTGCTCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGTGTCATTGGCAGTGCTGATGGCCCTTCTTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTCGATATGGACAAATTCAATTCTTCCACTGCAACCTCTGCAATACAAGTTGGTGAGTCATCTTCTGCAGTGAGATCAACTCCTACTTCAGAAATTGGAGCAGCAACTTCTAAAGATGATACTGCTGTTGGTTTGAAGGAGAGGTCAAGAGTTAGACACCAGCACAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCGGAAGAAGTCTCTGCCGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAATCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGCGATTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGGTAAGGACCTCATCTGTAATTTCATTTTTCAGGTGACTGCACATTATGGTTGCCTTCTCTTAGTTTTCATCTAA 987 45.19 MEKDKPQSHSGGFLPPSSRYSGLSPTGSSFNGKSEATSSSMSLPPMASGANSDSSQFSRGMSTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVRSTPTSEIGAATSKDDTAVGLKERSRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDGKDLICNFIFQVTAHYGCLLLVFI 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12019986 12027749 - Tan0011396.2 Tan10g1193 765987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1193 328 MobiDBLite consensus disorder prediction 1 85 - -
Tan10g1193 328 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1193 328 MobiDBLite consensus disorder prediction 11 69 - -
Tan10g1193 328 Coils Coil 244 299 - -
Tan10g1193 328 Gene3D - 227 279 - -
Tan10g1193 328 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1193 328 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 305 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan10g1193 328 FunFam probable transcription factor PosF21 227 280 - -
Tan10g1193 328 SUPERFAMILY Leucine zipper domain 228 279 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1193 328 SMART brlzneu 224 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1193 328 Pfam bZIP transcription factor 228 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1193 Tan-Chr10:12019986 Tan10g1196 Tan-Chr10:12019986 1.40E-173 dispersed
Tan10g1192 Tan-Chr10:12019986 Tan10g1193 Tan-Chr10:12019986 3.50E-158 tandem
Tan10g1193 Tan-Chr10:12019986 Tan10g1194 Tan-Chr10:12019986 5.60E-159 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28570 PF00170 bZIP_1 9.30E-09 CL0018 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1193 - - - 0.0