Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1219 ATGTACCAATCAACTTCCTCTTCTTCTTCTTCTCAGAAATCCATGCCCTCCTCCCACGCCGGCGGCGGCGGTGGGGCTCTGGGTCTTACTCGTTACGGTTCTGCACCTGGGTCTCTCCTGACCTCGGCGGTGGATTCCGTCATCGGTAATCACCATCCGGACTCCGCCGCCTCGCTCCGTACGCCGCCCTCGTTCGCCGGTCACTACTTCTCCTCCGCTGACTCCTCCGTTGTCGAGTCCTCGAGGAAGGTTGTTCAATCGTCGTCGACTTCCAACGATCTGAAATCGTCGTCGTCAGCGGCGCCCTTGCACCGGTCGTACGGACTCCACGATTTGGCACTTGGGGATTTCTCTAAGGCGAGAAATTTTAGTAGTAATGGTGGGCAATCGTCTTCCTCTTCCCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCCGAAGCAAACGGAGGAGGATTTTCATTGACAAGAGGAGGAGTTGGGAATGGAATAGGAAGACTGAAGTCACAAGTGAGTTTCAGTGGTGGTGGGCAAGATTGTTTGTCTCAAATCTCTGAAATGAGTGAAAGTGTTGTGGAAGGTACCTCATTTGCAGCCACACCCAATGCCTTTGCTATGGATTCTTGGGACACCTCCTCCAATTCCATTGTCTTTGCTGCTCCTCCTCATCCCAAAACATCCAAGCATCACCATCACTCTCATAATAATCATAATAATAATGCCGAGTTTTTCAATTGCCTCGAGTCTCAGTTTAGCCTGCCGCAGACAAGTCTAGAAATGGCAACAGTAGAGAGACTGCTTCAAATTCCAGAAGACTCTGTTCCTTGTAAGATCCGAGCCAAGCGTGGCTGCGCTACTCACCCTCGCAGCATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATGCAGACATGTTGGACTTAGCAGTGCAGCATATCAAGGGACTTCAAGATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTCATAA 1092 50.27 MYQSTSSSSSSQKSMPSSHAGGGGGALGLTRYGSAPGSLLTSAVDSVIGNHHPDSAASLRTPPSFAGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSAAPLHRSYGLHDLALGDFSKARNFSSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEANGGGFSLTRGGVGNGIGRLKSQVSFSGGGQDCLSQISEMSESVVEGTSFAATPNAFAMDSWDTSSNSIVFAAPPHPKTSKHHHHSHNNHNNNAEFFNCLESQFSLPQTSLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQDQIQKLNKEVENCTCGSKECS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12689077 12698302 + Tan0012689.1 Tan10g1219 766013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1219 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 91 350 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan10g1219 363 Coils Coil 331 358 - -
Tan10g1219 363 SMART finulus 297 347 IPR011598 GO:0046983(InterPro)
Tan10g1219 363 Gene3D - 292 360 IPR036638 GO:0046983(InterPro)
Tan10g1219 363 MobiDBLite consensus disorder prediction 1 18 - -
Tan10g1219 363 MobiDBLite consensus disorder prediction 1 28 - -
Tan10g1219 363 FunFam Transcription factor bHLH130 family 292 360 - -
Tan10g1219 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 355 IPR036638 GO:0046983(InterPro)
Tan10g1219 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 341 IPR011598 GO:0046983(InterPro)
Tan10g1219 363 Pfam Helix-loop-helix DNA-binding domain 297 342 IPR011598 GO:0046983(InterPro)
Tan10g1219 363 CDD bHLH_AtbHLH_like 296 348 IPR045239 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0547 Tan-Chr6:4234127 Tan10g1219 Tan-Chr10:12689077 4.20E-26 dispersed
Tan09g0864 Tan-Chr9:59920924 Tan10g1219 Tan-Chr10:12689077 1.20E-31 dispersed
Tan10g1219 Tan-Chr10:12689077 Tan10g2095 Tan-Chr10:67241050 4.80E-26 dispersed
Tan10g1219 Tan-Chr10:12689077 Tan08g1463 Tan-Chr8:60112554 1.60E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28575 PF00010 HLH 5.10E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1219 - - - 0.0