Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1227 ATGATTGACTTTTGTATGAACCATGTCTTTGCAGGCACGGAGTTTCTATCAGCTGGAAGGTTACATCAAACTCAGTATGATGGCCAACGTCAATTACCCCGAGGCCTTCCTAATTGGATTAACGACAAAGAAGCAGAAATTCTTCGTCTTGGCTACGTTAAACCAGAAGTAGTAAGCTGGTCACCACGAATCATTGTATTACATAATTTTTTGAGCTCAGAGGAGTGCGACTACCTGAAGGCAATTGCACTTCCTCGCCTTGAAATTTCCACGGTTGTGGATACAAAAACAGGGAAGGGAGTTAAGAGCGATTTCAGAACGAGCTCTGGAATGTTTTTAAGTACTCAAGAGAAAAATTATCCAATGGTCCAGGCAATCGAAAAAAGAATTTCTGTCTATTCTCAAATACCGATAGAAAATGGAGAGCTTATTCAAGTATTAAGGTACGAGAAGAATCAATTTTACAAGCCTCATCATGACTACTTTTCTGATACTTTTAACTTGAAGCGTGGTGGTCAGCGAATAGCAACCATGCTTATGTACCTAACTGACAACGTTGAAGGTGGAGAAACCTACTTTCCGAAGGCTGGTTCTGGCGAGTGTAGTTGTGGTGGGAAAACTGTCCCAGGGTTGTCGGTTAAACCAGTCAAAGGAGATGCAGTGCTTTTCTGGAGCATGGGATTGGATGGACAGTCGGATCCTAATAGCATTCATGGAGGCTGTGAAGTACTGGGAGGCGAAAAATGGTCTGCCACAAAATGGCTGAGGCAAAAGAGTACTCTGGTACCAACAGTTTAA 798 42.61 MIDFCMNHVFAGTEFLSAGRLHQTQYDGQRQLPRGLPNWINDKEAEILRLGYVKPEVVSWSPRIIVLHNFLSSEECDYLKAIALPRLEISTVVDTKTGKGVKSDFRTSSGMFLSTQEKNYPMVQAIEKRISVYSQIPIENGELIQVLRYEKNQFYKPHHDYFSDTFNLKRGGQRIATMLMYLTDNVEGGETYFPKAGSGECSCGGKTVPGLSVKPVKGDAVLFWSMGLDGQSDPNSIHGGCEVLGGEKWSATKWLRQKSTLVPTV 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13097423 13129305 - Tan0001955.1 Tan10g1227 766021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1227 265 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 140 257 IPR005123 -
Tan10g1227 265 SMART p4hc 62 256 IPR006620 GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0031418(InterPro)
Tan10g1227 265 Pfam 2OG-Fe(II) oxygenase superfamily 144 256 IPR044862 -
Tan10g1227 265 Gene3D q2cbj1_9rhob like domain 55 256 - -
Tan10g1227 265 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 51 258 IPR045054 GO:0004656(PANTHER)|GO:0005783(PANTHER)|GO:0018401(PANTHER)
Tan10g1227 265 FunFam Prolyl 4-hydroxylase 1 55 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1227 K00472 - - csv:101206818 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0928 Tan-Chr10:7763039 Tan10g1227 Tan-Chr10:13097423 5.00E-45 dispersed
Tan10g1227 Tan-Chr10:13097423 Tan06g2600 Tan-Chr6:78640148 7.20E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1099 . . . . . Bpe14g01050 . . . . Cma06g01625 . . . Sed02g1052 Cpe08g00102 Cpe03g01265 Bhi01g02618 Tan10g1227 Cmetu07g0599 . Hepe05g1285 . Lcy11g1242 . . . . . . . . . . Cone11ag0636 . . . . . Blo07g00195 . Bda13g00264 . Bpe13g00639 Bma02g00980 . . Cmo06g01621 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007865 1 2 0 1 1 1 2 1 2 1 1 1 2 1 1 3 1 1 2 1 1 1 1 0 2 1 1 1 1 1 36