Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1257 ATGGACACCACAGCCACTCTCTGCCAATTTCCTCCATATCCGTTCACTCCTCATCGCCATAGCCACCAACTCCTCAACTGCCTCTCCTCGCCGAAGTCCCGACAACCCTTCACCACTCTCTCCTGCTTCAAACCACGCCGTCGAACTCGCCGGAAAAACAGGCTCGCCAAGTTCCGCACCACCCAATCGCCCCTCGATTCCTCCTCCTCTTCCTCCTCAGACTCGAAGCTCCAAACTGTAATTGAACTCGACCAATTCACCGCCGAAGCCTCCTCTCTCTTCTACTCCGTCTACTACTCCTCCCGTTCCCAATTTCGCCAGTTTCTGTCGTCAGGATTGGACGCTTTCGATGATTTGCAGACGTTGATTGCTTTCGATCACCAGAATCGCACACTGACCGTCTCGTGTCGGCGTTCCACTGTGGAATTCGTCGGTCAGTTGGTGCTATTGAGCTTCGTTGTGGTTTTTGTAGTTAGGGTTTTAATTGGGATCGGGTCTCGTTTTCGTAACACATTTAACTCCGGGTATATTGCTCCTGTGGTCAGGAGGGACCGGAGCCTCGGGGGACGAGAGGTTGTTGTTGGGACTGAGAGGAGTGTTGTAGCGCGAGATAAAGCCATGGCGAAGAAGAACAATCTTTTTGGGATATTGGATAGTCCGCTGCCCATGGCTTCAATGGCTCTGACTGATGTTTCAGATGAAGTTTCGAGGAATGGGGCTTGGGTTGGAGATAGGTTGCCGAAATGGTGGCCTCCGGCAGTTCGCAGACGGATTGCCACGGCGAATAGGCAAGAGTATCAGATAGAAGCCAACAGATTAGTGCGAGCCCTCGTGGACAATAGAATGAGTGGGCGGGATTTCATGGAGGATGATATTCTACATTTGCGTCAAATATGCAGGATGTCTGGAGTAAAAGTATCCTTCAACACAGAAAATATGCGTGATTCATTCTATCGAGCATCAGTGGACTTTGTTTTGAATATCTATAGCAGGACTCCAATTTACCCTAACTCAGTTCTCATTAATGGTGAGGATGGTCCAAATTTTGTAGCTGGGCTTGCTGAGGACATTGGCATTGAGAATGTTCGTGCTGCCAGGATAGTTTCTGCTGCTGTTGCTGCTAGAATGCGTTCATGCTTTCTACAGGCCTGGGCTCTAGTTATGCAAGACAGACATTCTGAAGCAGATGCAGAGTTGTTGAAGATCTGTCACATTGTCCAGATATTTCCTCCTGAGGAGTCCTCTCCTGAGATGGAAATGTTGACTTTAGGCTTGAAGAAACACTTGAAGGTAGAACAGAGAGAATCTTTAATGAATATGTTTATTGGTGTCTGTCGTAAAGATAGTCATAGGACCGCTGCAGAAGCTCTTGGTTTGGTATGTCCTTAA 1389 48.38 MDTTATLCQFPPYPFTPHRHSHQLLNCLSSPKSRQPFTTLSCFKPRRRTRRKNRLAKFRTTQSPLDSSSSSSSDSKLQTVIELDQFTAEASSLFYSVYYSSRSQFRQFLSSGLDAFDDLQTLIAFDHQNRTLTVSCRRSTVEFVGQLVLLSFVVVFVVRVLIGIGSRFRNTFNSGYIAPVVRRDRSLGGREVVVGTERSVVARDKAMAKKNNLFGILDSPLPMASMALTDVSDEVSRNGAWVGDRLPKWWPPAVRRRIATANRQEYQIEANRLVRALVDNRMSGRDFMEDDILHLRQICRMSGVKVSFNTENMRDSFYRASVDFVLNIYSRTPIYPNSVLINGEDGPNFVAGLAEDIGIENVRAARIVSAAVAARMRSCFLQAWALVMQDRHSEADAELLKICHIVQIFPPEESSPEMEMLTLGLKKHLKVEQRESLMNMFIGVCRKDSHRTAAEALGLVCP 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14137056 14146030 + Tan0004930.2 Tan10g1257 766051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1257 462 PANTHER OS05G0299200 PROTEIN 19 461 - -
Tan10g1257 462 MobiDBLite consensus disorder prediction 53 73 - -
Tan10g1257 462 MobiDBLite consensus disorder prediction 58 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1257 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1256 Tan-Chr10:14137056 Tan10g1257 Tan-Chr10:14137056 1.20E-258 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1153 . . . . . Bpe14g01045 . . . . Cma06g01639 Cma14g01486 Car06g01394 Car14g01322 Sed12g0649 Cpe08g00089 Cpe03g01250 Bhi01g02654 Tan10g1257 Cmetu07g1360 . Hepe05g1254 . Lcy11g1198 . . . . . . . . Cone15ag0594 . . . . . Cme07g01871 . . . . . . . . . Cmo06g01638 Cmo14g01521 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005122 1 1 1 0 1 1 2 1 1 1 0 1 2 1 1 3 1 2 2 1 1 1 1 2 4 1 1 1 2 1 39