Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1276 ATGGCGGAATTCCTGTGGACTTTTGCAGCGCAAGAACTGTTGAAGAAGACAGTGAAACTCGCAGCAGAGCAAATCGGCCTGGCCTGGGGTTTCAAGAAGGAGCTCTCAAAGCTGAGGGACTCTTTGCTCATGGTGGAAGCCATCCTTCGCGATGTTGACAGAATTAAGGCAGAGCATCAAGCCGTGAAGCTATGGGTGGAGAAGCTTGAAGAGATCGTTTTCGAAGCCGATGTTTTACTCGACGAACTCGCTTATGAAGATCTCCGACGCAAGGTTGAACCCAAGAAAGAGGTGATGGTAAGTAATTTCGTTTCATTCTCCAAAAACCCCCTTGTTTTTCGTCTCAAAATGGCCAATAAAATTAAGACCATAGCTAGGATGTTGGAACAGCATTATTGTGCAGCGAGTGCTGTGGGGCTTGTTGCTATAATATCGAAAGAAATTGAACTCGATATTAGCCAGATTCAAGAGACTGACTCGTTTCTTGATGAGTTTGGAGTTATCGGGAGGGAAATTGAAGTTTTGGAGATTGTGAATACGTCGGTTGATCTTAGTCATCGGAGATTAGCTTTGTCTGTTCTACCAATTGTTGGTATGGGTGGATTAGGAAAAACAGCTCTGACGAAAGTGATATTCAATCATGAACTGATAAAGGGGAATTTTGATAGAACTATATGGGTGTGTGTTTCAAACCCTTTTGTTATTAAGAAAATTTTACGAGCAATTTTGGAAACTCTTAATCCTAATTTTGGTGGCCTAGATAGTAAGGAAGCCTTACTTGGAGAGCTCAAAAAATTGTTGGATGACAAAAAATATTTTCTGGTGCTTGATGATATTTGGAATGAGAATCTTACCCTATGGAATGACTTGAAGACATGTTTGTTAAAGGTTACTCAAAGATCTGGAAATGTTGTTGTTGTGACTACTAGGAGTGATAGAGTTGCTGAAATCATGGAGACACATTCCAGATACCATTTGAGAGAATTATCTGATGACCATTGTTGGTCTTTATTCAAGAAATATGCATTTGGAAATGAATTGCTAATAATTCCCGAGTTGGATATTGTTCGGAAAGAGCTCGTTAAAAGATTTGGTGGCATACCGTTGGTTGTTAAAGTGTTAGGAGGAATGGTGAAATTTGAAAAGAATCAAGAGGGATTGCAGTCGACTTTGGAACGCCTCATGAGAGTTCCGTTGAAAGATGAAAATCATGTTTTATCCACGATAAAATTAAGTGTGGATCGCCTACCATTATCCTCATTGAAACAATGCTTTGCCTATTGTTCAAATTTCCCTAAAGACTCTAAGTTTAGAAAAGATGCACTTATTCAGACGTGGATAGCACAAGGATTTATTCAACCGGCTGAGGGAAGCAACGAAATGATGGAGGATATTGGAGACAAGTACTTTAACATTTTGTTATCTCGCTCCTTGTTTCAAGATGTCGTTAAGGATAATAGAGAGAGAACTCTATGGTGTAAGATGCACGATCTTATACATGATGTTGCATGTGCTATTTCAAATTCTCAAGAAGTGAAATGGATTCCTTTAGATTTATTGGATGGAAAACCTCGGAGAGGCGAAAAACCTAGGAGAGGTGAAGATTGTTCAACTGGTCATAAAGTAAAAACAATTGATTGTAGTGAAAATAGTGCTAGAAAGTTGCACATGTTGACATTTGATAGTGACGTGTTTCACAATAAAATCACAAACTTCACCCACCTGCGCGTTTTAATTGCATATTCATGGTTTATATGTTCGTTACCAAATTCAATTGCTAAGTTGAAGCATTTGAGATACATTGACATTTCATATTCTACCATAAGGGAGCTACCAGAATCTGTTGTTTTGCTTTATAACTTGCAAACATTGAGGCTTGGAAGATTTTTTCACGACCTTCCAAAAAACTTGAGAAAGTTGGTTAGTTTAAGACATTTGGAATTTTTCGCTGATCGTCGTGATAATAAGCAAATGCCTCAACATTTGGGTCAACTGATTCAACTTCAAACATTGTCTAGTTTCGTAGTTGGGTTTGATAATGGATGTAAGATAGAAGAGCTTGGATCTTTGAAAAACCTTAAAGGTAAATTAAACATTTTGTGTCTTGAGCGAGTAAAAAATAAAAAGGAAGCTATGGCAGCAAATTTGGTGGAGAAGGAGAATATTTCTGATCTATATTATTATTGGAGTTTGGGATGTGAAAGAGAAGGAAGCAATTACAATGATTTGAATGTGTTGGAAGGACTTCAACCCCATAAAAATCTTCAAACCTTGGGAATTCATAACTTTGCAGGAGGATCTCTGCCTAGTGGTATTTTTGTTGAAAATTTGGTCGAGATATATCTACACGATTGCGAATTATGTGAAACTTTACCAATGCTTGGTCAATTATCCAAGCTTGAAGTACTTAAATTTCGTTGCTTACATAGTGTAAGAAGTATTGGGGAAGAATTCTATGGGAATTACCTTGACAAGAGGACTTTATTCCCAAAGTTGAAAACGTTTCATATTTGTGAAATGAACAATCTTGAGAATTGGGAAGAAATAATGGTTGTATCAAACTGTACAATTTTTCCTCATCTTGAAAGCTTGAACATTGTTCATTGTCCGAAATTAATGAGTATTCCGAACTTTTTTGCATCTCATCATGAGAGTTTTGAAGTTGATATTGGTGCTAGCTTTCAAGGTTCATCAAAGCTTCGATCTCTAAAGATTTTGGGATGTGAAAATTTGACAAAACTACCAAATGGCTTAGAATTTTGCAGCTCCCTGGAAAACATGTTGATAAGCAACTGTTCTAATTTGATTTCTCTCCCAAGCTTGCAAAATATGCACAATTTATCTTCTTTAAGCATAATGGAGTTTCGAAAGTTGCCAGAGGGATTAGCTCATGTTCGTAACTTGAAACGGTTGAGTGTTCATGGATACTTGCAAGGTTACGATTGGAGTCCGCTCGCGCAGCTCGGTTCGCTCGAAAATCTTGTGTTGGCTGAGTTGGATGGAAGTTGTGCAACACAACTTCCTCAACAACTTGAGCATCTCACTTCTTTAAGATCACTACATATTTTGCATTTTAATGGAGTTGAAGCTCTACCAGAATGGTTTAGAAACTTTACATCTTTGGAAAGATTGAAGCTTTACAATTGCATAAAGTTGAAGAACATGCCGTCAAAGGAAGCCATTTCAAATCTCACCAGATTGAAGAGTCTACGAGTTTATGGATGTTCGCAGCTTGAGCTTAACAAAGGTGACTTTGAGCAGGTGAAAATTTCCCTTGGTTCTGTACTTTGA 3291 37.71 MAEFLWTFAAQELLKKTVKLAAEQIGLAWGFKKELSKLRDSLLMVEAILRDVDRIKAEHQAVKLWVEKLEEIVFEADVLLDELAYEDLRRKVEPKKEVMVSNFVSFSKNPLVFRLKMANKIKTIARMLEQHYCAASAVGLVAIISKEIELDISQIQETDSFLDEFGVIGREIEVLEIVNTSVDLSHRRLALSVLPIVGMGGLGKTALTKVIFNHELIKGNFDRTIWVCVSNPFVIKKILRAILETLNPNFGGLDSKEALLGELKKLLDDKKYFLVLDDIWNENLTLWNDLKTCLLKVTQRSGNVVVVTTRSDRVAEIMETHSRYHLRELSDDHCWSLFKKYAFGNELLIIPELDIVRKELVKRFGGIPLVVKVLGGMVKFEKNQEGLQSTLERLMRVPLKDENHVLSTIKLSVDRLPLSSLKQCFAYCSNFPKDSKFRKDALIQTWIAQGFIQPAEGSNEMMEDIGDKYFNILLSRSLFQDVVKDNRERTLWCKMHDLIHDVACAISNSQEVKWIPLDLLDGKPRRGEKPRRGEDCSTGHKVKTIDCSENSARKLHMLTFDSDVFHNKITNFTHLRVLIAYSWFICSLPNSIAKLKHLRYIDISYSTIRELPESVVLLYNLQTLRLGRFFHDLPKNLRKLVSLRHLEFFADRRDNKQMPQHLGQLIQLQTLSSFVVGFDNGCKIEELGSLKNLKGKLNILCLERVKNKKEAMAANLVEKENISDLYYYWSLGCEREGSNYNDLNVLEGLQPHKNLQTLGIHNFAGGSLPSGIFVENLVEIYLHDCELCETLPMLGQLSKLEVLKFRCLHSVRSIGEEFYGNYLDKRTLFPKLKTFHICEMNNLENWEEIMVVSNCTIFPHLESLNIVHCPKLMSIPNFFASHHESFEVDIGASFQGSSKLRSLKILGCENLTKLPNGLEFCSSLENMLISNCSNLISLPSLQNMHNLSSLSIMEFRKLPEGLAHVRNLKRLSVHGYLQGYDWSPLAQLGSLENLVLAELDGSCATQLPQQLEHLTSLRSLHILHFNGVEALPEWFRNFTSLERLKLYNCIKLKNMPSKEAISNLTRLKSLRVYGCSQLELNKGDFEQVKISLGSVL 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14524903 14528408 + Tan0012945.1 Tan10g1276 766070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1276 1096 Gene3D - 154 324 IPR027417 -
Tan10g1276 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 428 IPR027417 -
Tan10g1276 1096 Gene3D - 328 411 IPR042197 -
Tan10g1276 1096 Gene3D - 412 505 IPR036388 -
Tan10g1276 1096 Pfam NB-ARC domain 191 414 IPR002182 GO:0043531(InterPro)
Tan10g1276 1096 Coils Coil 702 722 - -
Tan10g1276 1096 SUPERFAMILY RNI-like 857 1079 - -
Tan10g1276 1096 Pfam Rx N-terminal domain 11 97 IPR041118 -
Tan10g1276 1096 Gene3D Ribonuclease Inhibitor 723 884 IPR032675 -
Tan10g1276 1096 Gene3D Ribonuclease Inhibitor 885 953 IPR032675 -
Tan10g1276 1096 Gene3D - 9 123 - -
Tan10g1276 1096 SUPERFAMILY L domain-like 494 880 - -
Tan10g1276 1096 Gene3D Ribonuclease Inhibitor 533 722 IPR032675 -
Tan10g1276 1096 Gene3D Ribonuclease Inhibitor 954 1091 IPR032675 -
Tan10g1276 1096 PRINTS Disease resistance protein signature 364 378 - -
Tan10g1276 1096 PRINTS Disease resistance protein signature 193 208 - -
Tan10g1276 1096 PRINTS Disease resistance protein signature 919 935 - -
Tan10g1276 1096 PRINTS Disease resistance protein signature 266 280 - -
Tan10g1276 1096 PANTHER DISEASE RESISTANCE PROTEIN RP 23 932 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Tan10g1276 1096 FunFam Probable disease resistance protein At1g63360 413 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1276 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1169 Tan-Chr10:11775043 Tan10g1276 Tan-Chr10:14524903 3.00E-263 dispersed
Tan10g1170 Tan-Chr10:11775043 Tan10g1276 Tan-Chr10:14524903 3.00E-263 dispersed
Tan10g1276 Tan-Chr10:14524903 Tan10g1278 Tan-Chr10:14634141 0.00E+00 dispersed
Tan10g1276 Tan-Chr10:14524903 Tan10g1277 Tan-Chr10:14618012 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1249 . . . . . . . . . . . . . . Sed02g1027 . . Bhi01g02658 Tan10g1276 Cmetu07g1550 . . . Lcy11g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325