Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1283 ATGCCTTCGCAAGAGCCACTTCCCAGATGGGCTTCAAAGCCTTGTGTAATGGGAATCGACGAAGCTGGTCGAGGCCCTGTTTTAGGGCCAATGGTATATGGATGCCTGTACTGCGCTAGTTCCTATTTGGAAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAACGTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAAATTTGAAGGCTAATGAATCTATTGGATGGGCGGTTGATGTCATAGATCCTCGGGAGCTTTCATCCAAAATGCTAAATAAAGTGAAGATAAATCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTTTATGTGGATACTGTTGGAGATGCTGAAAAGTACAGAATAAAATTATCTGAAAAATTTCCCAATGTAAAATTTGTCGTAGCAAAGAAGGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCGTTGCGGGAATGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCGACTACTAAAAGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGGTTCCCCACATTGGTCCGTTTCAGCTGGGGTACCTGCACTTCATATTTCAAGGACATTGTTGAAGTATCATGGGAATCAGACAGAGTGGATGAAGATGGGCCTACAGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACAACAAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGCTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCACTTTTGA 894 42.06 MPSQEPLPRWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLEELSSLNFADSKTLKEEKREELFENLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDAEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKSWLEDHKHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDRVDEDGPTAGSGKKQLRLSNVGITTTKRKSEEIESNAKGRCKFFQARKLEQLTHF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14774807 14779051 - Tan0016747.1 Tan10g1283 766077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1283 297 NCBIfam ribonuclease HII 16 228 IPR004649 GO:0004523(InterPro)|GO:0016070(InterPro)
Tan10g1283 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523(InterPro)
Tan10g1283 297 Gene3D - 3 186 IPR036397 GO:0003676(InterPro)
Tan10g1283 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 277 IPR001352 GO:0003723(InterPro)|GO:0004523(InterPro)|GO:0004523(PANTHER)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER)
Tan10g1283 297 Gene3D Ribonuclease hii. Domain 2 187 234 IPR023160 GO:0004523(InterPro)
Tan10g1283 297 FunFam Ribonuclease 188 235 - -
Tan10g1283 297 CDD RNase_HII_eukaryota_like 17 233 - -
Tan10g1283 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523(InterPro)
Tan10g1283 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Tan10g1283 297 FunFam Ribonuclease 2 186 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1283 K10743 - csv:101210143 565.074