Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1284 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCGGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATTCGAGGGAAGATGCACAAAAAGGTCTGGATCGCAGCTGGCGATATAATACTCGTGGGTCTTCGTGACTACCAGGATGACAAAGCTGATGTTATACTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAGCACACGTCTGAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGCTGGCGCTGATGACTACCTTGAGTTCGAGGACGAAGATATTGATAAGATTTAG 438 47.03 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDAGADDYLEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14779839 14782476 - Tan0005776.1 Tan10g1284 766078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1284 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Tan10g1284 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan10g1284 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Tan10g1284 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
Tan10g1284 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan10g1284 145 MobiDBLite consensus disorder prediction 1 25 - -
Tan10g1284 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Tan10g1284 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan10g1284 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan10g1284 145 Gene3D - 2 145 IPR012340 -
Tan10g1284 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Tan10g1284 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0409 Tan-Chr2:3531085 Tan10g1284 Tan-Chr10:14779839 1.40E-46 dispersed
Tan10g1284 Tan-Chr10:14779839 Tan05g0948 Tan-Chr5:7727661 1.20E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1284 K03236 - rcu:8265575 259.996