Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1384 ATGCAGATGATGCTCTCCAAGGCCTCCTCTGCCATGGCCTCTTTGCCTTGCACTAGGGTGAGAAGCGTATGTGTCTGGCCGAGCGTGAAACAACTTTCCTTTAGAAAAGACCTTTTATATGGGGTTATGCGACTCTTATCTACACCATTGAAGACGTTGCGTGGAGCTAGTCGTTCACTTAAAGTTGCTCAGTTTTGCAGTGTCGTCAATATGTCCTCCACATTGCAAATTGAACTGGTACCTTGCCTACGTGACAACTATGCATACCTCTTACATGATGTTGATACGGGCACAGTTGGTGTTGTTGATCCTTCTGAAGCTCTACCAGTTATAGATGCTTTAAGCAAGAAAAACAGAAATTTGACATATATACTTAATACTCATCATCACCATGATCACACGGGTGGGAATGAAGAATTAAAAGCAAGGTATGGAGCGAAGGTGATTGGCTCTGGAATAGATAGTGACAGGATTCCTGGAATTGACATAACTTTAAAAGATGGAGACAAGTGGATGTTTGCTGGCCACGAAGTGCACGTAATGGAAACTCCTGGTCATACTCGAGGTCATATTAGCTTCTATTTTCCTGGATCAGCAGCAATATTTACTGGTGATACTTTATTCAGCTTATCTTGTGGCAAGCTTTTTGAAGGAACTCCTGAGCAGATGCTATCTTCCCTTAAAAAGATCACTTCTTTGCCAGACGATACAAACATATTTTGCGGTCATGAGTATACTTTGAGTAATTCTAAGTTTGCTTTGTCCATTGAACCTGAGAACGAGGCTCTCAAATCTTTTGCAACCCAGGTTGCTAATCTACGAAGCAAGGGCTTACCAACGATTCCAACAACATTAAAGATGGAGAAAATGTGCAATCCTTTCCTCCGAACATCGAGTACAGAAATTCGGCAGTCGTTAAAAATTCAAAATACAGCGGATGATGCAGAGGTCTTGGGTATCATTCGTAAAGCTAAGGATAATTTTTAG 987 41.54 MQMMLSKASSAMASLPCTRVRSVCVWPSVKQLSFRKDLLYGVMRLLSTPLKTLRGASRSLKVAQFCSVVNMSSTLQIELVPCLRDNYAYLLHDVDTGTVGVVDPSEALPVIDALSKKNRNLTYILNTHHHHDHTGGNEELKARYGAKVIGSGIDSDRIPGIDITLKDGDKWMFAGHEVHVMETPGHTRGHISFYFPGSAAIFTGDTLFSLSCGKLFEGTPEQMLSSLKKITSLPDDTNIFCGHEYTLSNSKFALSIEPENEALKSFATQVANLRSKGLPTIPTTLKMEKMCNPFLRTSSTEIRQSLKIQNTADDAEVLGIIRKAKDNF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17809268 17815819 + Tan0008240.1 Tan10g1384 766178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1384 328 Hamap Hydroxyacylglutathione hydrolase [gloB]. 75 328 IPR017782 GO:0004416(InterPro)|GO:0019243(InterPro)
Tan10g1384 328 NCBIfam hydroxyacylglutathione hydrolase 78 328 IPR017782 GO:0004416(InterPro)|GO:0019243(InterPro)
Tan10g1384 328 SMART Lactamase_B_5a 85 243 IPR001279 -
Tan10g1384 328 Pfam Metallo-beta-lactamase superfamily 88 243 IPR001279 -
Tan10g1384 328 PANTHER HYDROXYACYLGLUTATHIONE HYDROLASE 75 328 IPR050110 -
Tan10g1384 328 CDD hydroxyacylglutathione_hydrolase_MBL-fold 80 243 IPR035680 -
Tan10g1384 328 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 328 IPR036866 -
Tan10g1384 328 Gene3D - 75 328 IPR036866 -
Tan10g1384 328 Pfam Hydroxyacylglutathione hydrolase C-terminus 244 328 IPR032282 -
Tan10g1384 328 FunFam Hydroxyacylglutathione hydrolase, mitochondrial 75 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1384 K01069 - - csv:101223148 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1453 Tan-Chr4:17398156 Tan10g1384 Tan-Chr10:17809268 3.40E-50 dispersed
Tan04g1454 Tan-Chr4:17398156 Tan10g1384 Tan-Chr10:17809268 4.00E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1275 . . . . . Bpe14g01061 . . . . Cma06g01708 Cma14g01412 . Car14g01242 Sed02g0960 . . Bhi01g03727 Tan10g1384 Cmetu07g1769 . . . Lcy11g1001 . . . . . . . . . . . . . . Cme07g01973 Blo02g00447 Blo07g00115 Bda11g00477 Bda13g00253 . . Bma02g00969 Bma06g01440 . . Cmo14g01447 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006291 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38