Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1419 ATGGCGTCTTCCCCCTCCTCAATGTTGCTCCCACTTGGTTCAGCTTCTGGAAAACACCAAGGAATTTCCAGTGATAAAGTACGATCTCTTGTCGTGCGCTGCTTGAATGCCAATATCACTGCCAGAGAATGGCGGATGAAAGAGTATGGGAAAGAATTCAACTTGACTAGAAGAAGAGAGATGATTGGTTTAGTTTGTGGAGTGTCAAGTCTCGTTATAGATGCTCTAAATGTCAAGGCAGCTGGCTTGCCTCCAGAGGACAAGCCAAAACTATGTGACGATGCCTGTGAGAAAGAACTTGAAAATGTTCCTATGGTCACTACTGAGTCTGGTTTGCAGTATAAGGACATCAAAGTTGGTGGTGGCCCCCGTCCACCTGTTGGATTTCAGGTGGCTGCAAATTATGTTGCCATGATTCCCTCTGGACAAATTTTCGACAGTTCACTTGAGAAGAATCAGCTTTATATCTTTCGCGTTGGATCTGGTCAAGTAATCAAGGGACTTGATGAAGGGATTTTAAGCATGAAAGTTGGTGGGAAGCGTCGACTGTACATTCCCGGATCTTTGGCATTCCCTAAAGGCCTGACATCAGCTCCAGGAAGGCCAAGGGTGGCTCCAAATAGCCCTGTGGTATTTGATGTCAGTCTTGAATACATTCCAGGCCTTGAAGAAGATGAAGAGTGA 684 45.61 MASSPSSMLLPLGSASGKHQGISSDKVRSLVVRCLNANITAREWRMKEYGKEFNLTRRREMIGLVCGVSSLVIDALNVKAAGLPPEDKPKLCDDACEKELENVPMVTTESGLQYKDIKVGGGPRPPVGFQVAANYVAMIPSGQIFDSSLEKNQLYIFRVGSGQVIKGLDEGILSMKVGGKRRLYIPGSLAFPKGLTSAPGRPRVAPNSPVVFDVSLEYIPGLEEDEE 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19050615 19055265 - Tan0007599.1 Tan10g1419 766213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1419 227 MobiDBLite consensus disorder prediction 1 21 - -
Tan10g1419 227 Gene3D - 100 218 IPR046357 GO:0003755(InterPro)
Tan10g1419 227 FunFam Peptidylprolyl isomerase 100 218 - -
Tan10g1419 227 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 125 216 IPR001179 GO:0003755(InterPro)
Tan10g1419 227 SUPERFAMILY FKBP-like 93 216 - -
Tan10g1419 227 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 128 220 IPR001179 GO:0003755(InterPro)
Tan10g1419 227 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 78 219 - GO:0003755(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1419 K01802 - - csv:101220326 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3229 Tan-Chr1:86517566 Tan10g1419 Tan-Chr10:19050615 9.50E-07 dispersed
Tan10g1419 Tan-Chr10:19050615 Tan10g1421 Tan-Chr10:19050615 6.10E-80 dispersed
Tan10g1419 Tan-Chr10:19050615 Tan10g1420 Tan-Chr10:19050615 7.90E-120 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1287 . . Bda03g00972 . Bpe04g00898 . . . . . . Cma14g01427 . Car14g01257 Sed12g0549 . Cpe03g01199 Bhi01g03696 Tan10g1419 Cmetu07g0756 . . . . . . . . . . . . . . Cone11ag0649 . . . Cme07g01953 . . . . . . . . . . Cmo14g01463 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009069 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33