Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1452 ATGGCTTACCAAAATGGTTCGGTGGAGAGGTTTTGCAGCAGCAATACTGATCCACTGAACTGGGGTGTGGCGAGTGAGTCACTAAAGGGAAGTCATTTGGATGAAGTCAAGCGGATGGTGGAAGAGTTTCGAAGGCCTATTGTGAAACTTGGAGGAGAGACTCTGACCATTTCCCAAGTGGCTGCCATTGCTACTCGTGATATTAATGATATTGTCATTGTTGAATTGGCTGAGTCTTCCAGGGCTGGTGTTAAAGCAAGCAGCGATTGGGTAATGGACAGCATGAGTCAAGGCACTGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAAGAACTCATTCGATTCTTGAATTCTGGCATTTTTGGAAATGGGTCTGAATCTAATCACACTTTACCTCACTCTGCCACTAGAGCAGCCATGTTGGTGAGAATCAACACTCTCCTTCAAGGCTATTCTGGAATTAGATTTGAGATTTTGGAAGCTATTGCTAATCTCTTGAATCACAATGTCACTCCATGCTTGCCACTACGAGGGACAATTACAGCTTCTGGAGATTTAGTCCCTTTGTCTTATATTGCTGGACTACTCACCGGTCGTCACAACTCTAAAGCCATTGGACCCAACGGTGAAATCCTAGATGCAAAGGCTGCTTTTCAACATGCTGCCATTCATTCTGGATTCTTTGAGTTGCAACCCAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGCTGGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGTTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAAGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTAACTCATAAGTTGAAGCACCACCCCGGTCAAATCGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAACGGCCAAGAAATTGCATGAAATGGATCCTCTCCAAAAGCCAAAACAAGATCGTTACGCTCTTAGAACTTCTCCTCAGTGGTTGGGTCCCTTGATTGAAGTCATTCGATTCTCCACAAAGTCAATTGAACGAGAAATTAATTCAGTCAATGATAACCCTTTGATTGATGTTTCAAGAAACAAAGCATTGCACGGAGGCAACTTCCAAGGAACACCCATTGGAGTTTCTATGGACAACACTCGTTTGGCCATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTTGTCAATGATTTCTACAATAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGCTTAGATTATGGGTTCAAAGGTGCTGAGATTGCCATGGCTTCTTATTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACAACTCATGTTCAAAGTGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATCGACATTCTTAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAATACAGTGAAAAACACTGTTAGCCAAGTGGCAAAAAAAGTGTTGACCACATCCTCTAATGGCCCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTTGTTGATAGAGAATACACCTTTGCATACATCGATGATCCATGCAGTGTTACTTACCCATTGATGCAAAAGTTGAGGCAAGTTCTCGTTGAGCATGCACTTAAAAATGGTGATAATGAAGTGAACACAAACACTTCAATCTTTCAAAAGATCGTTGCTTTTGAGGAGGAATTAGTGGCAGTCTTACCAAAAGATGTTGAAGACGTAAGGTTGGCATATGAGAATGGAAATTCTAAGATTGAAAATCAAATTAAGGATTGCAGGTCTTACCCATTATACAAATTTGTGAGAGAGGAGTTGGGAACAAGATTGCTCACCGGAGAAAAGGTGATATCTCCCGGAGAAGAATGCGAAAAGGTATTCACAGCTTTGTGTCAAGGAAAGATGATCGACTCTATCTTCGAGTGCTTGAAGGAATGGAATGGAGCTCCAATCCCTATCTGCTAA 2133 41.87 MAYQNGSVERFCSSNTDPLNWGVASESLKGSHLDEVKRMVEEFRRPIVKLGGETLTISQVAAIATRDINDIVIVELAESSRAGVKASSDWVMDSMSQGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGSESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEILDAKAAFQHAAIHSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTSSNGPLHPSRFCEKDLLKVVDREYTFAYIDDPCSVTYPLMQKLRQVLVEHALKNGDNEVNTNTSIFQKIVAFEEELVAVLPKDVEDVRLAYENGNSKIENQIKDCRSYPLYKFVREELGTRLLTGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19872823 19875180 - Tan0006937.1 Tan10g1452 766246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1452 710 Gene3D - 523 644 IPR023144 -
Tan10g1452 710 PANTHER HISTIDINE AMMONIA-LYASE 14 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Tan10g1452 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Tan10g1452 710 NCBIfam phenylalanine ammonia-lyase 17 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan10g1452 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Tan10g1452 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Tan10g1452 710 CDD PAL-HAL 53 520 IPR001106 -
Tan10g1452 710 FunFam Phenylalanine ammonia-lyase 8 256 - -
Tan10g1452 710 Gene3D - 9 256 IPR024083 -
Tan10g1452 710 FunFam Phenylalanine ammonia-lyase 257 547 - -
Tan10g1452 710 Pfam Aromatic amino acid lyase 55 536 IPR001106 -
Tan10g1452 710 SUPERFAMILY L-aspartase-like 17 710 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1081 Tan-Chr3:67036706 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan03g1082 Tan-Chr3:67043279 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan03g1083 Tan-Chr3:67047779 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan05g0231 Tan-Chr5:1770630 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan09g1108 Tan-Chr9:63385246 Tan10g1452 Tan-Chr10:19872823 8.50E-237 dispersed
Tan10g1452 Tan-Chr10:19872823 Tan11g0873 Tan-Chr11:7147840 0.00E+00 dispersed
Tan10g1452 Tan-Chr10:19872823 Tan10g1454 Tan-Chr10:19922572 1.20E-206 proximal
Tan10g1452 Tan-Chr10:19872823 Tan10g1453 Tan-Chr10:19921599 2.40E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1452 K10775 - csv:116401606 1313.52