Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan10g1476 | ATGGCTGGAGAAACTCCTACTGGCAACTCCGGCAATCCGCCGTCGACGCCCGATTCCCCCACCACCTCTGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGCCACACTTCCGACAACTACCCTGATGAGGACGAAGCCACCGTTGATCCTCGCATCGTTCACGACGAGCCTGACCCCGATGAAGAGGAGGAAGGAGAGGATCTTTACCACGACAATTTCTTGGACGACTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGATGATTCCTTAGAGGACGAGAGGGATTTGGATCAAATTATGGAGGACAGACGAGCTGCCGAGGTGGAACTCGACACTCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGACGACAATTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGTCCTCCAGCTGCAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCAGGTCGATCACAAAGGGAAAACTCACGAGACGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACGATGGATGCGGTTCGGCGCTTTATAGGCAAAAAGTTTAAGAAATTCTTGGAAACATATGTGAATCCGAAAAGTGGAAATGGTGAGCTTGAGTACATGCGACTGATAAATGAGATGGTGTTAGCTAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAACCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTGTTTGACATACACCCAAACTACAAAAATATCCACCAAACGATCTATGTTCGAATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGGATTGGGGGTGTAGTGACACGACGTTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGAACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTCGGTTCTTGTCCTGAATGCCAATCAAAAGGACCATTCACAGTAAATGTTGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCGGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTCTTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAATGGTTTTCCTGTATTTTCCACGGTCGTTGAAGCAAATTTTATTACCAAGAAGCAAGATCTGTTCTCTGCTTACAAGCTTACACAGGAAGACAAAGCAGAGATTGAGAAGTTGGCTAAAGACCCAAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCATGAGGACATAAAAACAGCAATCGCTCTTGCAATGTTTGGTGGTCAAGAAAAAAATGTTGAAGGGAAACATCGGTTACGAGGTGATATAAATGTACTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTAACAGCAGCAGTGCACAAGGATCCTGTCACAAGGGAATGGACCCTTGAAGGAGGGGCCCTTGTATTAGCCGATAGAGGAATTTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAACAACAAAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCTGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTAGAGTTGACAGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGACGAGATGCTTGCTAAGTTCGTAGTTGATAGTCATTTCAAATCACAGCCAAAGGGCGTTAATATTGATGATAAGTCTGTAAATGAATCTCAGGAGGACAGTCAAGACTCTACAAGGCCACTGGATCCGGAGGTGCTCCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCCAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCATGGACAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGTATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTGCTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTGCAGAAAGCGCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTCCTATATCTTCTTCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCGACGTTGGAGCTAACCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACATGAGATTTATGATCTGAAACCCTTCTTCACCAGCTCTCACTTTTCAAATTCTAATTTTGTGTTGGATGAAGAGCATGGAGTAATCAGGCATCACCTTGCCAGATGA | 2835 | 43.0 | MAGETPTGNSGNPPSTPDSPTTSAGFETDQLPHLSHTSDNYPDEDEATVDPRIVHDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEVELDTRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAAARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQTIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANFITKKQDLFSAYKLTQEDKAEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSQPKGVNIDDKSVNESQEDSQDSTRPLDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTLELTHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNSNFVLDEEHGVIRHHLAR | 944 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 21353966 | 21360497 | + | Tan0004669.1 | Tan10g1476 | 766270 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
| Tan10g1476 | 944 | Gene3D | - | 355 | 405 | - | - | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 471 | 482 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 337 | 354 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 395 | 409 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 360 | 372 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 456 | 467 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 724 | 748 | - | - | |
| Tan10g1476 | 944 | Gene3D | - | 487 | 861 | IPR027417 | - | |
| Tan10g1476 | 944 | Pfam | MCM N-terminal domain | 228 | 321 | IPR027925 | - | |
| Tan10g1476 | 944 | SMART | mcm | 324 | 839 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 730 | 744 | - | - | |
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Tan10g1476 | 944 | FunFam | DNA helicase | 220 | 324 | - | - | |
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 113 | 158 | - | - | |
| Tan10g1476 | 944 | FunFam | DNA helicase | 355 | 405 | - | - | |
| Tan10g1476 | 944 | CDD | MCM2 | 510 | 837 | - | - | |
| Tan10g1476 | 944 | Pfam | MCM P-loop domain | 495 | 717 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | Gene3D | - | 328 | 453 | IPR012340 | - | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 687 | 695 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 622 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 660 | 672 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 548 | 563 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 636 | 649 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | SUPERFAMILY | Nucleic acid-binding proteins | 229 | 476 | IPR012340 | - | |
| Tan10g1476 | 944 | FunFam | DNA helicase | 487 | 861 | - | - | |
| Tan10g1476 | 944 | Pfam | Mini-chromosome maintenance protein 2 | 44 | 167 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Tan10g1476 | 944 | Pfam | MCM OB domain | 327 | 454 | IPR033762 | - | |
| Tan10g1476 | 944 | ProSitePatterns | MCM family signature. | 616 | 624 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Tan10g1476 | 944 | Gene3D | - | 220 | 324 | - | - | |
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Tan10g1476 | 944 | ProSiteProfiles | MCM family domain profile. | 507 | 713 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan10g1476 | 944 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 517 | 841 | IPR027417 | - | |
| Tan10g1476 | 944 | Pfam | MCM AAA-lid domain | 754 | 838 | IPR041562 | - | |
| Tan10g1476 | 944 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 219 | 905 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER) | |
| Tan10g1476 | 944 | MobiDBLite | consensus disorder prediction | 113 | 209 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan02g1194 | Tan-Chr2:28312939 | Tan10g1476 | Tan-Chr10:21353966 | 8.40E-69 | dispersed | |
| Tan02g1195 | Tan-Chr2:28327923 | Tan10g1476 | Tan-Chr10:21353966 | 6.20E-69 | dispersed | |
| Tan06g0728 | Tan-Chr6:5605334 | Tan10g1476 | Tan-Chr10:21353966 | 3.70E-86 | dispersed | |
| Tan08g0333 | Tan-Chr8:2939791 | Tan10g1476 | Tan-Chr10:21353966 | 3.80E-89 | dispersed | |
| Tan08g1920 | Tan-Chr8:71479131 | Tan10g1476 | Tan-Chr10:21353966 | 1.90E-75 | dispersed | |
| Tan08g1921 | Tan-Chr8:71479131 | Tan10g1476 | Tan-Chr10:21353966 | 1.20E-72 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan10g1476 | K02540 | - | csv:101219546 | 1736.47 |