Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1520 ATGTACCACCATCATCAACATAGAGGGAAGAGCAATATCCATTCGTCTGAGAGGCATTTGTTTTTGCAAGGTGGAAATGGGCCTGGAGATTCTGGCCTTGTTCTTTCTACTGATGCTAAGCCTAGGCTTAAATGGACTCCTGATTTGCATGATCGTTTTGTTGAAGCTGTCAATCAGCTTGGGGGAGCTGACAAGGCTACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGACTTACCTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTGAGTAAGAATCTGCATGGACAAGCAAATGGTGGGGCTGGAACAAACAAAACTGGTATGGGTTGGCGTGTAGGGACAGTGGCGGTTTCGGGAGATCAGAGATTGGGGGAGGCAAATGGAGCAGCTCGCACTAACAACATAGTCGTCAGCCCACAGTCCTCCTCTCAGGCCAATAAAAGCCTTCAGATCAGTGAAACAATACAGATGCAGATTGAAGTGCAGAAAAGGCTACACGAACAACTCGAGGTACAACGGCACTTGCAGCTGCGAATAGAAGCACAAGGGAAGTATCTACAAACGGTGTTGGAGAAAGCACAAGAAACACTTGGAAGGCAAAACTTAGGCACAGTGGGACTTGAAGCCGCAAAAGTACAGCTTTCAGAATTGGTCTCAAAAGTCTCCACTCAATGCCTAACCGCAGCATTTCCAGAGCTCCACCATCAGCAGCAGCAGCAACAACAACAAACTCAAAGGCTATGCCCTCCACAAAGCCAGCCCCCTGACTGTTCAATGGACAGTTGCTTGACCTCCTGCGAGGGCTCCAAGGACCAACATGACCAACAAGTCCTCCTCCACAACAGCCACCTGGCCCTCCGACCCTATGCCATCCCCACCGACCGAGCCTCCTCGGCCCCGGACCACCATCATGGGCTGTCCATGAGCATTGGACTGGTGCAGGGGGACAAACCCGGCGAAGGGTATTATAATGGGTACTCGCCATCCGAGGGCCAGAGATTTGGGAGTAAAAGAAAGGAGGCGGAGACGGAGAAGGTGGTTGACGCCGCGTTTAGATATAGAATCGCGGCGTCTTCGTTGGACTTGAATGCTGGTGAGGATCAACTTAGTAATAATGATCATCCGCCTTCTGCTAATTGCAAGATGTTTGATCTTAATGGCTTTAGCTGA 1185 49.62 MYHHHQHRGKSNIHSSERHLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGAGTNKTGMGWRVGTVAVSGDQRLGEANGAARTNNIVVSPQSSSQANKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHHQQQQQQQQTQRLCPPQSQPPDCSMDSCLTSCEGSKDQHDQQVLLHNSHLALRPYAIPTDRASSAPDHHHGLSMSIGLVQGDKPGEGYYNGYSPSEGQRFGSKRKEAETEKVVDAAFRYRIAASSLDLNAGEDQLSNNDHPPSANCKMFDLNGFS 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23426252 23429080 + Tan0007722.1 Tan10g1520 766314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1520 394 Gene3D - 39 97 - -
Tan10g1520 394 MobiDBLite consensus disorder prediction 1 27 - -
Tan10g1520 394 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Tan10g1520 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 281 IPR046955 GO:0003700(InterPro)
Tan10g1520 394 FunFam Myb family transcription factor 39 97 - -
Tan10g1520 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677(InterPro)
Tan10g1520 394 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Tan10g1520 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Tan10g1520 394 Pfam MYB-CC type transfactor, LHEQLE motif 154 201 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1520 Tan-Chr10:23426252 Tan01g3584 Tan-Chr1:100891063 4.70E-11 dispersed
Tan10g1520 Tan-Chr10:23426252 Tan10g1521 Tan-Chr10:23426252 2.90E-202 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28590 PF00249 Myb_DNA-binding 5.70E-08 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1520 - - - 0.0