Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan10g1521 | ATGTACCACCATCATCAACATAGAGGGAAGAGCAATATCCATTCGTCTGAGAGGCATTTGTTTTTGCAAGGTGGAAATGGGCCTGGAGATTCTGGCCTTGTTCTTTCTACTGATGCTAAGCCTAGGCTTAAATGGACTCCTGATTTGCATGATCGTTTTGTTGAAGCTGTCAATCAGCTTGGGGGAGCTGACAAGGCTACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGACTTACCTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTGAGTAAGAATCTGCATGGACAAGCAAATGGTGGGGCTGGAACAAACAAAACTGGGACAGTGGCGGTTTCGGGAGATCAGAGATTGGGGGAGGCAAATGGAGCAGCTCGCACTAACAACATAGTCGTCAGCCCACAGTCCTCCTCTCAGGCCAATAAAAGCCTTCAGATCAGTGAAACAATACAGATGCAGATTGAAGTGCAGAAAAGGCTACACGAACAACTCGAGGTACAACGGCACTTGCAGCTGCGAATAGAAGCACAAGGGAAGTATCTACAAACGGTGTTGGAGAAAGCACAAGAAACACTTGGAAGGCAAAACTTAGGCACAGTGGGACTTGAAGCCGCAAAAGTACAGCTTTCAGAATTGGTCTCAAAAGTCTCCACTCAATGCCTAACCGCAGCATTTCCAGAGCTCCACCATCAGCAGCAGCAGCAACAACAACAAACTCAAAGGCTATGCCCTCCACAAAGCCAGCCCCCTGACTGTTCAATGGACAGTTGCTTGACCTCCTGCGAGGGCTCCAAGGACCAACATGACCAACAAGTCCTCCTCCACAACAGCCACCTGGCCCTCCGACCCTATGCCATCCCCACCGACCGAGCCTCCTCGGCCCCGGACCACCATCATGGGCTGTCCATGAGCATTGGACTGGTGCAGGGGGACAAACCCGGCGAAGGGTATTATAATGGGTACTCGCCATCCGAGGGCCAGAGATTTGGGAGTAAAAGAAAGGAGGCGGAGACGGAGAAGGTGGTTGACGCCGCGTTTAGATATAGAATCGCGGCGTCTTCGTTGGACTTGAATGCTGGTGAGGATCAACTTAGTAATAATGATCATCCGCCTTCTGCTAATTGCAAGATGTTTGATCTTAATGGCTTTAGCTGA | 1167 | 49.53 | MYHHHQHRGKSNIHSSERHLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGAGTNKTGTVAVSGDQRLGEANGAARTNNIVVSPQSSSQANKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHHQQQQQQQQTQRLCPPQSQPPDCSMDSCLTSCEGSKDQHDQQVLLHNSHLALRPYAIPTDRASSAPDHHHGLSMSIGLVQGDKPGEGYYNGYSPSEGQRFGSKRKEAETEKVVDAAFRYRIAASSLDLNAGEDQLSNNDHPPSANCKMFDLNGFS | 388 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 23426252 | 23429080 | + | Tan0007722.2 | Tan10g1521 | 766315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan10g1521 | 388 | Pfam | MYB-CC type transfactor, LHEQLE motif | 148 | 195 | IPR025756 | - | |
| Tan10g1521 | 388 | SUPERFAMILY | Homeodomain-like | 39 | 95 | IPR009057 | - | |
| Tan10g1521 | 388 | FunFam | Myb family transcription factor | 39 | 97 | - | - | |
| Tan10g1521 | 388 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 40 | 95 | IPR006447 | GO:0003677(InterPro) | |
| Tan10g1521 | 388 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Tan10g1521 | 388 | Pfam | Myb-like DNA-binding domain | 42 | 93 | IPR001005 | - | |
| Tan10g1521 | 388 | Gene3D | - | 39 | 97 | - | - | |
| Tan10g1521 | 388 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 37 | 97 | IPR017930 | - | |
| Tan10g1521 | 388 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 275 | IPR046955 | GO:0003700(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan02g1465 | Tan-Chr2:58553866 | Tan10g1521 | Tan-Chr10:23426252 | 5.40E-36 | dispersed | |
| Tan10g0520 | Tan-Chr10:4152978 | Tan10g1521 | Tan-Chr10:23426252 | 1.50E-36 | dispersed | |
| Tan10g1521 | Tan-Chr10:23426252 | Tan11g1867 | Tan-Chr11:24114385 | 6.10E-11 | dispersed | |
| Tan10g1520 | Tan-Chr10:23426252 | Tan10g1521 | Tan-Chr10:23426252 | 2.90E-202 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28591 | PF00249 | Myb_DNA-binding | 5.60E-08 | CL0123 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan10g1521 | - | - | - | 0.0 |