Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g1572 | ATGAACGATCTTCTTTCGGATTCATTTGAGATCCCACGGGGTCAACATTCTAGAGGAGGAGACATTGAACTAGGAACAAATGCTCCTACTAGTGCAGGGGATCTGGGCTTGGAGGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTGGATAGGTTACTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTTACCAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGCTCTGTGAAGACCAAAGTCGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCTCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTCTGCGTGAAAAAATTCATCAAGAGTATCGGGAAGTTGTTGAGAGACGGATTTTCACAGTCACGGGTGCTAGGGCTGACGAGGAGACCATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATCTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACGGGTAATGGGTACTCTAGCTGAAATTCAAGAGCGCCACAGTGCAGTTAGAGAACTAGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCGGTATTGGTAGATGCACAAGGGGATATGCTCGATAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAGGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA | 927 | 43.8 | MNDLLSDSFEIPRGQHSRGGDIELGTNAPTSAGDLGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARSVKTKVEELDRENLANRQRLGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYREVVERRIFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGRVMGTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 25325195 | 25382614 | + | Tan0007235.1 | Tan10g1572 | 766366 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g1572 | 308 | CDD | SNARE_syntaxin1-like | 206 | 268 | - | - | |
Tan10g1572 | 308 | Gene3D | - | 203 | 300 | - | - | |
Tan10g1572 | 308 | PANTHER | SYNTAXIN | 39 | 289 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Tan10g1572 | 308 | ProSitePatterns | Syntaxin / epimorphin family signature. | 213 | 252 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Tan10g1572 | 308 | SUPERFAMILY | t-snare proteins | 35 | 262 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Tan10g1572 | 308 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 207 | 269 | IPR000727 | - | |
Tan10g1572 | 308 | CDD | SynN | 37 | 194 | IPR006011 | GO:0016020(InterPro) | |
Tan10g1572 | 308 | SMART | tSNARE_6 | 202 | 269 | IPR000727 | - | |
Tan10g1572 | 308 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Tan10g1572 | 308 | Coils | Coil | 210 | 230 | - | - | |
Tan10g1572 | 308 | Coils | Coil | 37 | 71 | - | - | |
Tan10g1572 | 308 | Gene3D | - | 34 | 161 | - | - | |
Tan10g1572 | 308 | FunFam | Syntaxin 132 | 32 | 161 | - | - | |
Tan10g1572 | 308 | FunFam | Syntaxin 132 | 200 | 300 | - | - | |
Tan10g1572 | 308 | Pfam | SNARE domain | 243 | 295 | IPR000727 | - | |
Tan10g1572 | 308 | Pfam | Syntaxin | 39 | 242 | IPR006011 | GO:0016020(InterPro) | |
Tan10g1572 | 308 | SMART | SynN_4 | 32 | 158 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g0863 | Tan-Chr5:6777016 | Tan10g1572 | Tan-Chr10:25325195 | 1.30E-14 | dispersed | |
Tan05g0864 | Tan-Chr5:6787038 | Tan10g1572 | Tan-Chr10:25325195 | 8.80E-86 | dispersed | |
Tan05g3221 | Tan-Chr5:84265978 | Tan10g1572 | Tan-Chr10:25325195 | 3.30E-65 | dispersed | |
Tan10g1572 | Tan-Chr10:25325195 | Tan08g1616 | Tan-Chr8:65581678 | 1.50E-65 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g1572 | K08486 | - | csv:101203075 | 523.087 |