Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1572 ATGAACGATCTTCTTTCGGATTCATTTGAGATCCCACGGGGTCAACATTCTAGAGGAGGAGACATTGAACTAGGAACAAATGCTCCTACTAGTGCAGGGGATCTGGGCTTGGAGGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTGGATAGGTTACTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTTACCAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGCTCTGTGAAGACCAAAGTCGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCTCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTCTGCGTGAAAAAATTCATCAAGAGTATCGGGAAGTTGTTGAGAGACGGATTTTCACAGTCACGGGTGCTAGGGCTGACGAGGAGACCATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATCTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACGGGTAATGGGTACTCTAGCTGAAATTCAAGAGCGCCACAGTGCAGTTAGAGAACTAGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCGGTATTGGTAGATGCACAAGGGGATATGCTCGATAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAGGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA 927 43.8 MNDLLSDSFEIPRGQHSRGGDIELGTNAPTSAGDLGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARSVKTKVEELDRENLANRQRLGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYREVVERRIFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGRVMGTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25325195 25382614 + Tan0007235.1 Tan10g1572 766366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1572 308 CDD SNARE_syntaxin1-like 206 268 - -
Tan10g1572 308 Gene3D - 203 300 - -
Tan10g1572 308 PANTHER SYNTAXIN 39 289 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan10g1572 308 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan10g1572 308 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan10g1572 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Tan10g1572 308 CDD SynN 37 194 IPR006011 GO:0016020(InterPro)
Tan10g1572 308 SMART tSNARE_6 202 269 IPR000727 -
Tan10g1572 308 MobiDBLite consensus disorder prediction 1 29 - -
Tan10g1572 308 Coils Coil 210 230 - -
Tan10g1572 308 Coils Coil 37 71 - -
Tan10g1572 308 Gene3D - 34 161 - -
Tan10g1572 308 FunFam Syntaxin 132 32 161 - -
Tan10g1572 308 FunFam Syntaxin 132 200 300 - -
Tan10g1572 308 Pfam SNARE domain 243 295 IPR000727 -
Tan10g1572 308 Pfam Syntaxin 39 242 IPR006011 GO:0016020(InterPro)
Tan10g1572 308 SMART SynN_4 32 158 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0863 Tan-Chr5:6777016 Tan10g1572 Tan-Chr10:25325195 1.30E-14 dispersed
Tan05g0864 Tan-Chr5:6787038 Tan10g1572 Tan-Chr10:25325195 8.80E-86 dispersed
Tan05g3221 Tan-Chr5:84265978 Tan10g1572 Tan-Chr10:25325195 3.30E-65 dispersed
Tan10g1572 Tan-Chr10:25325195 Tan08g1616 Tan-Chr8:65581678 1.50E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1572 K08486 - csv:101203075 523.087