Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1588 ATGATGCAGCCGGATCAAAGCTCTGAGCTTTACAGATTCCTAGCCCAGAACGGAGCCTTCAGCCTGGGCGGCGCTGCCGGATCCTGCAGCTTTCCGGCGGCCCAAAGCTTGTCAAGCTCATCCTCTTATTACCCTTTGGATCAGTCGCCGGCGGCTGCCACTGAGCCACCGCTGCCGTCGCCCCACGACAGAGCCCTCGCCGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGTAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACCGACAAGGCATCGCTTCTGGCAAAAGTGGTTCAGCGAGTGAAAGAGCTTAAGCATCAGACCTCAGACATTGCAGAGCTCGAAACCTTCCCTTCAGAGACGGACGAGATCACCGTCCTCTCCGGCGAGCAATCGGACGACGGACGGCTCCTTTTCAAGGCGTCGCTCTGCTGCGAGGACCGGTCGGACCTCATCCCGGAGCTGAACGACATACTGAATTCGCTGCAGCTTAAGACTCTGAGGGCCGACATCGTCACCGTCGGCGGCAGAATCCGCAATGTTCTTCTTATCGCCGCCAACGACCATCACAGCGTCGAATCGGTCCATTTTCTCCAGAACGCATTGAAATCACTTCTTGAACGATCCAATTCTAGCGATAGATCCAAGAGGAGGCGTCTTGTACTTGCAGCCCACAAATGA 717 54.95 MMQPDQSSELYRFLAQNGAFSLGGAAGSCSFPAAQSLSSSSSYYPLDQSPAAATEPPLPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKHQTSDIAELETFPSETDEITVLSGEQSDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSVESVHFLQNALKSLLERSNSSDRSKRRRLVLAAHK 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26787737 26790854 + Tan0014716.1 Tan10g1588 766382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1588 238 CDD bHLH_AtAIG1_like 63 138 - -
Tan10g1588 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983(InterPro)
Tan10g1588 238 Gene3D - 63 127 IPR036638 GO:0046983(InterPro)
Tan10g1588 238 PANTHER TRANSCRIPTION FACTOR BHLH30 42 234 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1588 238 SMART finulus 73 122 IPR011598 GO:0046983(InterPro)
Tan10g1588 238 MobiDBLite consensus disorder prediction 32 63 - -
Tan10g1588 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 126 IPR036638 GO:0046983(InterPro)
Tan10g1588 238 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983(InterPro)
Tan10g1588 238 MobiDBLite consensus disorder prediction 32 48 - -
Tan10g1588 238 FunFam transcription factor bHLH30 62 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0901 Tan-Chr4:7777428 Tan10g1588 Tan-Chr10:26787737 1.10E-36 dispersed
Tan05g2484 Tan-Chr5:76103459 Tan10g1588 Tan-Chr10:26787737 1.60E-31 dispersed
Tan10g1588 Tan-Chr10:26787737 Tan11g0290 Tan-Chr11:2276972 1.40E-29 dispersed
Tan10g1588 Tan-Chr10:26787737 Tan11g1947 Tan-Chr11:31004043 8.50E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28595 PF00010 HLH 1.10E-11 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1588 - - - 0.0