Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g1640 | ATGGCTTCTTCGTCCTCTGATCCTGGCTTGAAACACGAAGCCGGTGCCTGTAGTGCCGCTGCTGCTGGAGGAGGAACGGCGGAGTCTTCGGAGGTCGTAATGGCGAACGATCATCTTTTACTGTATAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATATCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTCTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATACGATGAAGAGGAGGCAGCTGCTCGGGCATATGATTTGGCAGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTCCCTGTGACTGATTATACAAGGGACCTAGAAGAAATGCAGAATGTTTCAAGAGAGGAATATCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTTTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGCTGGGATCCTTCATTTGGTCGTATGTCGGGCCCTGATTACGTCAACAGCATAAATTATGGTGCTGGAGATGATCAAACAACGGAAAGCGAATTCGTTCACAGCTTCTGCATTGAAAGGAAGATTGACTTAACCAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACAGGCAGTGCTGGCTCAAAGTCCTCAGAAGAAGACAAACATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTTGGACAGACTGCCCGTCCGACGGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTTCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAAAGAGAATGATGAGAATGAAAATAAAAACACTATTAACAAGATAGATCATGGGAAAGCGGTTGAAACACATACAAGTCATGGTGATGATCCCAGTGAGAGATATGGGGTTGCTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTTCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGACCCCTTGGGAGATCCGATTCATTGGACATCTCTCGTTTCCGTTCTTCCCACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACTGAAACCTCTTCAACTTACACTTTGTTTCGGCCCGAGGAATAA | 1296 | 45.52 | MASSSSDPGLKHEAGACSAAAAGGGTAESSEVVMANDHLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFGRMSGPDYVNSINYGAGDDQTTESEFVHSFCIERKIDLTSHIKWWGPNKTRTGSAGSKSSEEDKHSCAGEVGSELKALGQTARPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSFQEKALKLQEINKENDENENKNTINKIDHGKAVETHTSHGDDPSERYGVAFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE | 431 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 31967562 | 31972852 | - | Tan0019227.1 | Tan10g1640 | 766434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g1640 | 431 | PRINTS | Ethylene responsive element binding protein signature | 122 | 142 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan10g1640 | 431 | PRINTS | Ethylene responsive element binding protein signature | 75 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan10g1640 | 431 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 48 | 240 | - | - | |
Tan10g1640 | 431 | SUPERFAMILY | DNA-binding domain | 73 | 141 | IPR016177 | GO:0003677(InterPro) | |
Tan10g1640 | 431 | FunFam | AP2-like ethylene-responsive transcription factor | 73 | 142 | - | - | |
Tan10g1640 | 431 | SMART | rav1_2 | 74 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan10g1640 | 431 | Coils | Coil | 309 | 334 | - | - | |
Tan10g1640 | 431 | Pfam | AP2 domain | 75 | 132 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan10g1640 | 431 | Gene3D | AP2/ERF domain | 74 | 142 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan10g1640 | 431 | MobiDBLite | consensus disorder prediction | 237 | 257 | - | - | |
Tan10g1640 | 431 | ProSiteProfiles | AP2/ERF domain profile. | 74 | 140 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan09g1693 | Tan-Chr9:68529824 | Tan10g1640 | Tan-Chr10:31967562 | 1.50E-46 | dispersed | |
Tan10g1640 | Tan-Chr10:31967562 | Tan10g2066 | Tan-Chr10:66114484 | 3.70E-243 | dispersed | |
Tan10g1640 | Tan-Chr10:31967562 | Tan10g1641 | Tan-Chr10:31967562 | 6.10E-246 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28596 | PF00847 | AP2 | 3.50E-14 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g1640 | K09285 | - | csv:101206434 | 763.066 |