Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1640 ATGGCTTCTTCGTCCTCTGATCCTGGCTTGAAACACGAAGCCGGTGCCTGTAGTGCCGCTGCTGCTGGAGGAGGAACGGCGGAGTCTTCGGAGGTCGTAATGGCGAACGATCATCTTTTACTGTATAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATATCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTCTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATACGATGAAGAGGAGGCAGCTGCTCGGGCATATGATTTGGCAGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTCCCTGTGACTGATTATACAAGGGACCTAGAAGAAATGCAGAATGTTTCAAGAGAGGAATATCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTTTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGCTGGGATCCTTCATTTGGTCGTATGTCGGGCCCTGATTACGTCAACAGCATAAATTATGGTGCTGGAGATGATCAAACAACGGAAAGCGAATTCGTTCACAGCTTCTGCATTGAAAGGAAGATTGACTTAACCAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACAGGCAGTGCTGGCTCAAAGTCCTCAGAAGAAGACAAACATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTTGGACAGACTGCCCGTCCGACGGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTTCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAAAGAGAATGATGAGAATGAAAATAAAAACACTATTAACAAGATAGATCATGGGAAAGCGGTTGAAACACATACAAGTCATGGTGATGATCCCAGTGAGAGATATGGGGTTGCTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTTCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGACCCCTTGGGAGATCCGATTCATTGGACATCTCTCGTTTCCGTTCTTCCCACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACTGAAACCTCTTCAACTTACACTTTGTTTCGGCCCGAGGAATAA 1296 45.52 MASSSSDPGLKHEAGACSAAAAGGGTAESSEVVMANDHLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFGRMSGPDYVNSINYGAGDDQTTESEFVHSFCIERKIDLTSHIKWWGPNKTRTGSAGSKSSEEDKHSCAGEVGSELKALGQTARPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSFQEKALKLQEINKENDENENKNTINKIDHGKAVETHTSHGDDPSERYGVAFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31967562 31972852 - Tan0019227.1 Tan10g1640 766434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1640 431 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1640 431 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1640 431 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 240 - -
Tan10g1640 431 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677(InterPro)
Tan10g1640 431 FunFam AP2-like ethylene-responsive transcription factor 73 142 - -
Tan10g1640 431 SMART rav1_2 74 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1640 431 Coils Coil 309 334 - -
Tan10g1640 431 Pfam AP2 domain 75 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1640 431 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1640 431 MobiDBLite consensus disorder prediction 237 257 - -
Tan10g1640 431 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1693 Tan-Chr9:68529824 Tan10g1640 Tan-Chr10:31967562 1.50E-46 dispersed
Tan10g1640 Tan-Chr10:31967562 Tan10g2066 Tan-Chr10:66114484 3.70E-243 dispersed
Tan10g1640 Tan-Chr10:31967562 Tan10g1641 Tan-Chr10:31967562 6.10E-246 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28596 PF00847 AP2 3.50E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1640 K09285 - csv:101206434 763.066