Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1658 ATGGCTGATGCTGATCAGGAATTGCCTCGCCGGAAATCACTCGGGAAGCGTGCCTCCGCCGCCAACAGACCAGATACTGACTCCGCCACCGCCACTGCTACCGCGATCGGAGCTGCCCCAGCTCCCTGTGGTGCCTGCAAGTTTCTGAGAAGAAAATGCGTCAATGGCTGCATCTTTGCTCCGCATTTTGCCTCCGATCAGGGCGCCGCCCGCTTCGCCGCTGTCCATAAAGTATTTGGAGCGAGTAATGTATCGAAGCTGCTGCTGCATATTCCGGTCAGCCGCCGAAACGACGCCGTCGTCACCATTTCCTATGAGGCTCAAGCTAGACTCTCCGATCCTGTCTATGGCTGTGTCTCAACTGTACTCGCCCTACAACAACAGGTGGCATCTCTGCAAGCGGAGCTAGCGGCGGTTCAAAGTCAATTGATAAGCAGCAGGTTGGCATTTGCAACTGCAATTCAAAACTCACAGCCACCCCAAGTCGGAGTGCTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCCGCCTCCATCTCCGCTCATAATGCAATCAATTTGAGTAGTTTCGCTTCCAATTACGACCTTCCCACCGAGACTGCTCCTTCTCCTCATCACTTAGAGCCTCTTCACCTCCCTCACCGACCGATCGAAGACGAGGAAGACGAGGAAAATAGCCAGTTGCCTACAATCTTCGCCGACGAGTTACTCCGCCGGAGATGA 735 54.83 MADADQELPRRKSLGKRASAANRPDTDSATATATAIGAAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFATAIQNSQPPQVGVLQPAYSNNSSISVSASASISAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHRPIEDEEDEENSQLPTIFADELLRRR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34729835 34738249 - Tan0004974.1 Tan10g1658 766452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1658 244 Pfam Lateral organ boundaries (LOB) domain 42 140 IPR004883 -
Tan10g1658 244 PANTHER LOB DOMAIN CONTAINING PROTEIN 40 194 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Tan10g1658 244 Coils Coil 122 142 - -
Tan10g1658 244 ProSiteProfiles LOB domain profile. 41 143 IPR004883 -
Tan10g1658 244 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g2229 Tan-Chr7:73735870 Tan10g1658 Tan-Chr10:34729835 8.30E-35 dispersed
Tan07g2230 Tan-Chr7:73746238 Tan10g1658 Tan-Chr10:34729835 2.90E-39 dispersed
Tan10g0350 Tan-Chr10:2839583 Tan10g1658 Tan-Chr10:34729835 3.70E-37 dispersed
Tan10g1658 Tan-Chr10:34729835 Tan11g0653 Tan-Chr11:5740323 5.50E-26 dispersed
Tan10g1658 Tan-Chr10:34729835 Tan06g2154 Tan-Chr6:71327896 5.10E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28599 PF03195 LOB 1.40E-37 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1658 - - - 0.0