Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1756 ATGGCCGCCCTTCATCAAACCGCCGCTTCTCTCCAGGCCAAGCTTCTTCCAACCGTCCGAATCTCCCGAACCACTCCCGTAAATCTCTCCTTCTCCGCCACTTTTCCTTCCCGCAGACTCCGCCTCGTCCACCACCGCTCTCACGGCGGTGCTAAAATGTCCGCCACAGCCGCCGGAAGCTACGCCGCCGCACTCGCCGAAGTCGCCGCCTCGAACAACACACTGGACGCCACAAGCGCCGACGTCGAGAAGATCGAGAGCGTGTTCGCCGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTGGCATCGAGAAGAAACTGAAGGTCGTCGATGAGATCGCTTCGTCCTCGTCTCTACAGCCGCATTCGGCAAATTTCTTGAAAATCCTTGTGGACGCGAAGAGGATCGACATCGTGAAGGATATCGTGACGGAGTTCGAATTGGTGTACAACAAATTGACGAACACGGAGCTTGCGGTGGTGAGTTCAGTTGTGCAATTGGAGCAGCAGCATTTGGCACAGATCGCAAAGCAGGTGCAGAAATTGAGCGGAGCGAAAAATGTGAGGATCAAAACGCAGATCGATCCAAGTCTTGTGGCTGGATTCACTGTCAGGTTTGGAAATGCTGGATCGAAACTCATTGATTTGAGCGTTAAGAAACAGCTTGAGGAAATCGCTGCTCAGCTTGATCTTGGTAACATTCAACTAGCTGTATAA 723 52.84 MAALHQTAASLQAKLLPTVRISRTTPVNLSFSATFPSRRLRLVHHRSHGGAKMSATAAGSYAAALAEVAASNNTLDATSADVEKIESVFADSQVFDFFANPTIGIEKKLKVVDEIASSSSLQPHSANFLKILVDAKRIDIVKDIVTEFELVYNKLTNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNAGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 49857176 49858512 + Tan0004258.1 Tan10g1756 766550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1756 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 157 IPR026015 -
Tan10g1756 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 PANTHER ATP SYNTHASE DELTA CHAIN 29 231 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Tan10g1756 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Tan10g1756 240 Gene3D - 57 149 IPR026015 -
Tan10g1756 240 NCBIfam ATP synthase F1 subunit delta 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0085 Tan-Chr10:1174754 Tan10g1756 Tan-Chr10:49857176 1.40E-18 dispersed
Tan10g1756 Tan-Chr10:49857176 Tan04g2429 Tan-Chr4:83083472 4.20E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1756 K02113 - csv:101211740 396.741