Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1759 ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCAAATTGCTCGCACTGGTTCTGCGGAAGGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACAGCCGTGTAAATGCCCCCTTTGTCGCCGACAGATCACTTTATTGGTTCCTTCCGAGGTTTCAGCGACACAGCAAAGTGACCCTGAGGTTGCTCGCATTCTTAACAGTATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAAGTGGTTTAAATCAGCGACTGCAAGACCTTCCTTTCCTCCTACGGAGGTTGCTTCGGGAACTCCTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAGCACGTGTTTACATTGCAATGCTACTAAGTGTAGTCTACGCTGTGAGTCCCATTGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCTTTATACTGCTCATCTGCTTTCTTTATATTGCTGCTATATATCGATCGGTACTGTATAATCGCCATGGAGGAACTTGA 558 46.06 MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVPSEVSATQQSDPEVARILNSIRTYNRHFGGNSSGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYIAMLLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHGGT 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 50221994 50237062 + Tan0006181.1 Tan10g1759 766553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1759 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 103 IPR013083 -
Tan10g1759 185 PANTHER UNCHARACTERIZED 3 183 IPR038896 GO:0061630(InterPro)
Tan10g1759 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Tan10g1759 185 SMART ring_2 10 52 IPR001841 -
Tan10g1759 185 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Tan10g1759 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Tan10g1759 185 CDD RING-HC_RNF113A_B 4 61 - -
Tan10g1759 185 SUPERFAMILY RING/U-box 8 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1759 Tan-Chr10:50221994 Tan10g1760 Tan-Chr10:50221994 1.70E-75 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1759 K15707 - rcu:8281372 269.626