Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1780 ATGAAGGGTGTAATCTCAGTTTTTCCGAATGGAAGAAAACAACTCCACACAACAAGGTCGTGGGATTTCATGGGTTTGTCTCAACAAGCTAGTCGAGTTCCAACAGTAGAAAGTGACATCATCGTGGGAGTGTTTGATTCTGGCATCTGGCCAGAATCCCCTAGTTTTCTTGATCAAGGATATGGCCCACCGCCAACCAAGTGGAAGGGCAGTTGTGAAGTTTCAGCCAATTTCTCTTGCAACAATAAAATCGTTGGAGCTCGATCATATCGCAGCGATGGTGGGTATAGAGTAAATGATATGGAAGGACCAAGAGATTCAAATGGGCATGGGACACACACAGCGTCGACGGTGGCAGGCGGGTTGGTCGGGGGAGCGAGCATGGTCGGTCTCGGGTCGGGCACAGCAAGGGGAGGAGTTCCATCAGCGAGAATTGCTGCGTACAAAGTATGCTGGTTCGACGGTTGCAATGACGCAGACATCCTTGCTGCATTTGACGACGCCATTGCTGATGGGGTTGACATTATCTCCTTTTCTATTGGAGGAAGCATTCCAAGGGATTACTTCAATGACTCTATAGCTATTGGAGCTTTCCATGCAATGAAGAAGGGAATCCTCACGTCCATGTCCGCCGGCAACGACGGTCCAACCTTCTTCACTATTAGAAACTTCTCGCCTTGGTCTCTCTCAGTCGCGGCCAGTACTACTGATAGGAAATTTCTTACTGGAGTTCAACTTGGAGATGGAACAAGATTCAATGGAGTCACTATAAATACATTTGATCTAAATGGAACGCAATATCCGTTGGTTTATGCTGGAGATATACCAAATGTTATTGCTGGCTTCAATGGATCAAAATCCAGATTTTGCTTGGAAAACTCAGTGGACAGAGAGTTGGTAAAGGGTAAAATTGCCCTTTGTGATTTTATTGTATCTCCAAAGAAGGTCATGAGTTCTTTAAAAGGTGCAATTGGGATTATAATGCAAGACAGCACTCCAAAAGATCTCACATTCCCTTTTCCCTTGCCTGCTTCCCACCTTGGCAAACAAGAAGGAGCTCTCATTTCTTCTTATATCAACTTAAATAGTCTTCCAACAGCAACTATATTAAAGAGCATAGAAGGGAAGTATGAATCAACACCTTTTGTTGCATCTTTCTCTTCAAGGGGTCCAAATCCTGCAACTCTTGACATTCTCAAGCCGGATTTGACTGCCCCAGGAGTTGAAATTCTTGCAGCCTGGTCTCCAATAGGTCCACCTTCAGAAGCTGAGGATGATAATAGAAAGGTTCTTTATAATATAATTTCAGGGACTTCAATGTCTTGTCCACATGCCACAGCTGTGGCTGCATATGTTAAATCCTTCCACCCTTCTTGGTCTCCTGCTGCACTCAAATCAGCACTTATGACCACAGCATTTCCTATGAAAGTTGAACTTAACCCAGATGCAGAATTTGCATATGGTTCTGGCCATATAAATCCACTAAGCGCAGTGAATCCTGGATTAATCTATAACGCCACTGAAATTGACTATGTAAGATTTCTATGTGGTCAAGGTTATAGCACCAGATTGCTCCAACAAGTCTCTGAAGATAATACTACTTGTTCTTCAAACAATTTTGACACAGTGTTCGATCTAAACTATCCTTCATTTGCTCTTTCTACATCTATCTCAACTTCAATCACCCAAATTTACAAAAGAAGGGTTACAAATGTTGGGTCAACAAATTCTACATATAAAGCTACAATTTTGGCTCCCTTAGGGCTTAATATTACAGTGAACCCTTCTATTCTTTCATTCAAGGCTTTGGGAGAGGAGCAAAATTTTGAGCTTACAATTGAAGGAAGAATCAATAGTAGCATTGCATCGGCTTCCTTGGTATGGGATGATGGTGAACACAAAGTGAGGAGTCCTATTACAGTCTTTGATGCTAATACGTTCATTAATTAG 1950 42.56 MKGVISVFPNGRKQLHTTRSWDFMGLSQQASRVPTVESDIIVGVFDSGIWPESPSFLDQGYGPPPTKWKGSCEVSANFSCNNKIVGARSYRSDGGYRVNDMEGPRDSNGHGTHTASTVAGGLVGGASMVGLGSGTARGGVPSARIAAYKVCWFDGCNDADILAAFDDAIADGVDIISFSIGGSIPRDYFNDSIAIGAFHAMKKGILTSMSAGNDGPTFFTIRNFSPWSLSVAASTTDRKFLTGVQLGDGTRFNGVTINTFDLNGTQYPLVYAGDIPNVIAGFNGSKSRFCLENSVDRELVKGKIALCDFIVSPKKVMSSLKGAIGIIMQDSTPKDLTFPFPLPASHLGKQEGALISSYINLNSLPTATILKSIEGKYESTPFVASFSSRGPNPATLDILKPDLTAPGVEILAAWSPIGPPSEAEDDNRKVLYNIISGTSMSCPHATAVAAYVKSFHPSWSPAALKSALMTTAFPMKVELNPDAEFAYGSGHINPLSAVNPGLIYNATEIDYVRFLCGQGYSTRLLQQVSEDNTTCSSNNFDTVFDLNYPSFALSTSISTSITQIYKRRVTNVGSTNSTYKATILAPLGLNITVNPSILSFKALGEEQNFELTIEGRINSSIASASLVWDDGEHKVRSPITVFDANTFIN 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53828416 53839754 + Tan0006619.4 Tan10g1780 766574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1780 649 ProSitePatterns Serine proteases, subtilase family, serine active site. 437 447 IPR023828 -
Tan10g1780 649 PRINTS Subtilisin serine protease family (S8) signature 37 56 IPR015500 -
Tan10g1780 649 PRINTS Subtilisin serine protease family (S8) signature 106 119 IPR015500 -
Tan10g1780 649 PRINTS Subtilisin serine protease family (S8) signature 436 452 IPR015500 -
Tan10g1780 649 Pfam Fibronectin type-III domain 545 641 IPR041469 -
Tan10g1780 649 CDD Peptidases_S8_3 13 472 IPR034197 -
Tan10g1780 649 Gene3D - 515 643 - -
Tan10g1780 649 CDD PA_subtilisin_like 244 369 - -
Tan10g1780 649 FunFam Subtilisin-like protease SBT1.5 39 246 - -
Tan10g1780 649 Pfam Subtilase family 38 488 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Tan10g1780 649 Gene3D Peptidase S8/S53 domain 39 511 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Tan10g1780 649 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 639 IPR045051 -
Tan10g1780 649 SUPERFAMILY Subtilisin-like 15 502 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Tan10g1780 649 ProSiteProfiles Serine proteases, subtilase domain profile. 20 498 - -
Tan10g1780 649 Gene3D - 237 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1778 Tan-Chr10:53828416 Tan10g1780 Tan-Chr10:53828416 5.70E-276 dispersed
Tan10g1780 Tan-Chr10:53828416 Tan01g1194 Tan-Chr1:11648792 1.20E-109 dispersed
Tan10g1779 Tan-Chr10:53828416 Tan10g1780 Tan-Chr10:53828416 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1780 - - - 0.0