Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1797 ATGGATACCAAAGGCCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCCGATGAGGTTGCGAGAGTGACATCTGTGAAAGAGTTGAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGGTAGAAGTCACAGTTGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCCTTTCCAGTGTGTAGGCCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGTGATGAAGAAGAGGATGATATCGATGATCTGGAGAATGAGTTTGACATTGCAAACAAGGATCCTAACAGTGTATCTGAGGCAATGCTCTATCCTCACCTTGCCGTCGGTCGTGGCTCTCATGTTAATGGTTCTGGAAACATGGCTTCTGACCTTGACTCCTCATCCATCCCGACTGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAAGTCCATCCGGTGCCATTCACTGATTCTCCCATGTCTGCCAATCCAAGGCCAATGGATCCAAAAAAGGATTTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAGAGAATGGAGGACTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCACGAGGGTGGAGGTGGAAAAGGCGATGATGAGTTTGACGATACAGATTTGCCTGTGATGGACGAAGGAAGGCAACCACTTTCAAGAAAATTGCCCATCTCCTCGAGCAAGATAAATCCATACAGAATGATAATTGTACTTCGTATTGTCATCCTGTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCTATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACCTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTACGTCAGTACGGTGGATCCATTGAAGGAGCCTCCTCTCATCACTGCAAACACCGTCCTGTCTATTCTTGCTGTCGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCTGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTTAATATTGAACCTCGGGCCCCAGAATGGTATTTTGTCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCAACATTCGTCAGGGAACGACGTGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGGATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGATGGACAATGCAGGACGGAACTCCATGGCCTGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTCAAAACGGGGTTCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCAGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTGCGTGTCTCAGCAATCATCTCAAATGCTCCATACATTTTGAACGTGGATTGTGATCACTACATCAACAACAGCAAGGCACTTAGAGAAGCTATGTGCTTCATGATGGACCCAATTTCAGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTATTTTTCGATATTAACATGAAAGGATTAGACGGTATTCAAGGGCCGATTTATGTCGGAACTGGGTGCGTCTTCAGGAGGCAGGCTCTTTATGGGTATGATGCCCCTGCCAAGAAGAAAACACCAAGAAGGACTTGTAACTGTCTGCCAAAGTGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGAGTAAAACAAAGACCAGCGATAAAAAGAAGTTAAAGACCAAAGATACGTCGAAGCAGATTCACGCACTTGAAAATATTGAGGAAGGAATCGAAGGAATAGATAACGAGAAATCATCACTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCGCCAGCATTCATCGCTTCCACACTTATGGAAGACGGTGGTGTGCCTGGAGGAGGGACGTCTGCTTCGTTGTTGAAAGAAGCCATCCATGTAATCAGTTGCGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAAGATATTTTAACTGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAACGGGCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTTCACCAAGTTCTTCGGTGGGCTCTTGGATCTGTTGAAATTCTGTTGAGCAGGCATTGCCCAATATGGTACGGATACGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACATCAATTCCATTGATCGCTTATTGTACCCTGCCAGCTGTCTGCCTGCTTACTGGGCAGTTTATCGTCCCTGAGCTAACCAACTATGCCAGCATCATTTTCATGGCCCTTTTCATCTCTATAGCAGCAACCGGTATTCTAGAAATGCAGTGGGGAGGTGTCGGGATTCATGATTGGTGGAGAAACGAGCAGTTCTGGGTTATCGGTGGTGCTTCCTCTCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAATTTCACTGTCACATCCAAGGGAGGAGATGATGGGGAGTTTGCCGAGCTTTACCTCTTCAAGTGGACATCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATCGGAGTAGTCGTCGGAATTTCAGATGCCATCAACAATGGTTATGACTCATGGGGACCCCTCATCGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATTTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCAATTCTTCTATCATCCATACTGTCGCTTTTATGGGTCCGAATCAACCCCTTCCTCGACAAGGGTGGCATTGTATTGGAAGTTTGTGGGTTAAACTGTGACGACTAA 3273 44.82 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEVEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSVSEAMLYPHLAVGRGSHVNGSGNMASDLDSSSIPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFTDSPMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDEFDDTDLPVMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRILHPVYEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFVQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKTPRRTCNCLPKWCCCCCGTRKKSKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRAAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELTNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 55052167 55059071 + Tan0007259.1 Tan10g1797 766591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1797 1090 FunFam Cellulose synthase 21 112 - -
Tan10g1797 1090 CDD mRING-HC-C4C4_CesA 37 87 - -
Tan10g1797 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Tan10g1797 1090 FunFam Cellulose synthase 480 654 - -
Tan10g1797 1090 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Tan10g1797 1090 Coils Coil 99 119 - -
Tan10g1797 1090 SUPERFAMILY Nucleotide-diphospho-sugar transferases 377 880 IPR029044 -
Tan10g1797 1090 Pfam Cellulose synthase 363 1077 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Tan10g1797 1090 SUPERFAMILY RING/U-box 28 107 - -
Tan10g1797 1090 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 509 655 IPR029044 -
Tan10g1797 1090 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 283 1058 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Tan10g1797 1090 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1361 Tan-Chr3:70069167 Tan10g1797 Tan-Chr10:55052167 0.00E+00 dispersed
Tan06g1409 Tan-Chr6:18243052 Tan10g1797 Tan-Chr10:55052167 1.90E-260 dispersed
Tan09g1580 Tan-Chr9:67607605 Tan10g1797 Tan-Chr10:55052167 0.00E+00 dispersed
Tan10g0565 Tan-Chr10:4576606 Tan10g1797 Tan-Chr10:55052167 5.30E-208 dispersed
Tan10g1797 Tan-Chr10:55052167 Tan05g0894 Tan-Chr5:7188981 2.20E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1797 K10999 - csv:101214061 2112.81