Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1823 ATGGCTTCCTTGGCAGCCTCCACCGCCGCCGCCTCCCTCGGCATCTCCGAAATGCTCAGAAATCCCCTCAGCTTCTCCGGTGCCTCTGCTCGGTCCGCTCCGTCCCCTTCTAGCCCGGTGGCCTCCAAGACCGTTGCGCTTTTCGGGAAGAAGCCAGCCGCCCCCAAGCCGAAGGCCTCCGTCGTCTCTCCGATCGACGACGAGCTCGCCAAGTGGTATGGTCCTGACAGAAGGATTTTCTTGCCCGAGGGGCTGTTGGACCGATCCGAGATCCCCGAGTACTTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCGTTTGGATTGAGCAAGAAACCAGAAGACTTCAGCAAATACCAAGCATTTGAGTTGATTCATGCACGATGGGCGATGCTTGGAGCTGCTGGTTTCATTATCCCTGAGGCGTTCAACAAATTCGGTGCCAACTGCGGGCCTGAGGCTGTGTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATTGTCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGTGCAGAATATTACAGAATCATCAACGGCTTGAACTTTGAGGACAAGCTTCACCCAGGAGGTCCATTCGACCCGTTGGGGCTCGCGGACGACCCGGACCAGGCAGCAATCTTGAAAGTGAAGGAGATCAAGAATGGAAGATTGGCCATGTTTGCAATGCTAGGGTTTTACTTCCAGGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGAAATGCTGAAAGAGTTCCAACTCTTTAA 873 53.04 MASLAASTAAASLGISEMLRNPLSFSGASARSAPSPSSPVASKTVALFGKKPAAPKPKASVVSPIDDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56891961 56895897 + Tan0022571.1 Tan10g1823 766617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1823 290 SUPERFAMILY Chlorophyll a-b binding protein 71 280 - -
Tan10g1823 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 285 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Tan10g1823 290 Gene3D Chlorophyll a/b binding protein domain 79 290 - -
Tan10g1823 290 FunFam Chlorophyll a-b binding protein, chloroplastic 79 290 - -
Tan10g1823 290 Pfam Chlorophyll A-B binding protein 92 253 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2608 Tan-Chr5:77367028 Tan10g1823 Tan-Chr10:56891961 8.90E-54 dispersed
Tan05g2609 Tan-Chr5:77376359 Tan10g1823 Tan-Chr10:56891961 1.80E-54 dispersed
Tan10g1823 Tan-Chr10:56891961 Tan05g0624 Tan-Chr5:4631506 1.80E-55 dispersed
Tan10g1823 Tan-Chr10:56891961 Tan04g2344 Tan-Chr4:81912241 7.90E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1823 K08916 - csv:101218137 518.85