Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1838 ATGTTGAAGCTTCCGCGATGGTTGTCGAGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGCTGGTCATGTTGAACATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAAAATTTTACCCATACAGTCCCAAAGAATGCAAGTGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATACCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGAAGTCTTGTAATTGATCGACGTGGTTCAGTACTGCTGACATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATAAATTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCGGATGGGAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACACGCAAAATACCAAGGAATTCTTGAGTGTTCCCTTCACATCCGGCGAATTTTCTGTGATGAAGACAGCGTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCTAATCTTGGCATGGGAAAGATTCTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGGTGA 726 42.84 MLKLPRWLSRNQLFEQIVCKKAGHVEHPFGSHPFSSRVGIPDSRQNFTHTVPKNASDRVYAAYNVYKGKAGLSMIPCLPTFTKLESGSLVIDRRGSVLLTFFPAIGERKYDWTKKQLFALSPTEVGTLINLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNTQNTKEFLSVPFTSGEFSVMKTACSFALPHILGWDRLTKPNLGMGKILQPNKVDREALSLEWER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58033529 58049994 + Tan0009417.1 Tan10g1838 766632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1838 241 Gene3D Transcriptional Coactivator Pc4; Chain A 52 223 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan10g1838 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 35 241 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan10g1838 241 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan10g1838 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 240 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2819 Tan-Chr1:56868200 Tan10g1838 Tan-Chr10:58033529 2.60E-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28608 PF08536 Whirly 1.80E-53 CL0609 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1838 K26561 - csv:101219085 395.971