Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1838 ATGTTGAAGCTTCCGCGATGGTTGTCGAGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGCTGGTCATGTTGAACATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAAAATTTTACCCATACAGTCCCAAAGAATGCAAGTGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGACTCTCTATGATACCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGAAGTCTTGTAATTGATCGACGTGGTTCAGTACTGCTGACATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATAAATTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCGGATGGGAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACACGCAAAATACCAAGGAATTCTTGAGTGTTCCCTTCACATCCGGCGAATTTTCTGTGATGAAGACAGCGTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCTAATCTTGGCATGGGAAAGATTCTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGGTGA 726 42.84 MLKLPRWLSRNQLFEQIVCKKAGHVEHPFGSHPFSSRVGIPDSRQNFTHTVPKNASDRVYAAYNVYKGKAGLSMIPCLPTFTKLESGSLVIDRRGSVLLTFFPAIGERKYDWTKKQLFALSPTEVGTLINLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNTQNTKEFLSVPFTSGEFSVMKTACSFALPHILGWDRLTKPNLGMGKILQPNKVDREALSLEWER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58033529 58049994 + Tan0009417.1 Tan10g1838 766632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1838 241 Gene3D Transcriptional Coactivator Pc4; Chain A 52 223 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan10g1838 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 35 241 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan10g1838 241 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Tan10g1838 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 240 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1838 K26561 - - csv:101219085 395.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2819 Tan-Chr1:56868200 Tan10g1838 Tan-Chr10:58033529 2.60E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1756 . . . Bda03g00364 . Bpe04g00326 . . . . Cma01g00881 . Car01g00805 . . . . . . . . . . . Cla08g00178 . Cec08g0075 . . Cmu08g0168 Cre08g0158 . . . . . . . Cme09g00121 . . . . . . . . Sed08g1728 Cmo01g00923 . . . . . . Cpe02g00983 Bhi06g00113 Tan10g1838 Cmetu09g1050 . . . . . . . . . . . Lsi08g00178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g2819 . 47 272 Whirly Transcription Factor Family AT1G14410 70.0 5.3e-91 331.6
Tan10g1838 . 56 215 Whirly Transcription Factor Family AT1G71260 66.3 1.4e-58 223.8
Tan01g2819 . 47 272 Whirly Transcription Factor Family AT2G02740 70.0 7.8e-90 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28608 PF08536 Whirly 1.80E-53 CL0609 Tan TF