Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1839 ATGGCTTATGACCATTTGGATCCATCTAAAGGCTATTCAGTTGCTTCAGGACCAGGTCCAGTTTCAAGGCCTGCACCTGAACTGAAACTCTATCAGTTTTTTGTTTTCTGTATTCCAATTTTTTTCACTTTCATTCTTCTCTTCCTTTTCTATCTCCTTTATCTTCGTCGCCGAAGGGCTGATTGGACTTCCATCCGAATGCGAACATCTGCAGCAGTCAACAACAATGGCATCTCTACATCTGAAGTGGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCCATTATTGTGTACAATGAGACATTCTTTGTCACTGACACACTATGTTCAGTCTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTGGACTGCATTGATCATTGGCTATGCAACCACACCACTTGCCCGCTCTGCCGTCTCACCGTCCTTTCTCCGTCCCAACCACCACGACCACATGTTCAGATTGAGATGGGGCTCGAATCGTCGAATGAACAACAACGCGATGGAACAACTCCTCGAGAAAGTAATCAAGCTCATCAACTTGCAACACCTCCAGTGTAA 597 44.22 MAYDHLDPSKGYSVASGPGPVSRPAPELKLYQFFVFCIPIFFTFILLFLFYLLYLRRRRADWTSIRMRTSAAVNNNGISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLCNHTTCPLCRLTVLSPSQPPRPHVQIEMGLESSNEQQRDGTTPRESNQAHQLATPPV 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58061493 58063844 - Tan0006097.1 Tan10g1839 766633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1839 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 156 IPR013083 -
Tan10g1839 198 SUPERFAMILY RING/U-box 93 158 - -
Tan10g1839 198 CDD RING-H2_EL5-like 109 151 - -
Tan10g1839 198 MobiDBLite consensus disorder prediction 170 198 - -
Tan10g1839 198 PANTHER RING-H2 FINGER PROTEIN ATL16 24 178 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Tan10g1839 198 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Tan10g1839 198 MobiDBLite consensus disorder prediction 161 198 - -
Tan10g1839 198 Pfam Ring finger domain 108 151 IPR001841 -
Tan10g1839 198 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1530 Tan-Chr7:66545111 Tan10g1839 Tan-Chr10:58061493 4.20E-19 dispersed
Tan10g1839 Tan-Chr10:58061493 Tan11g0967 Tan-Chr11:7779023 1.90E-13 dispersed
Tan10g1839 Tan-Chr10:58061493 Tan09g1636 Tan-Chr9:67998134 1.40E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1839 K19039 - csv:101219324 296.204