Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g1839 | ATGGCTTATGACCATTTGGATCCATCTAAAGGCTATTCAGTTGCTTCAGGACCAGGTCCAGTTTCAAGGCCTGCACCTGAACTGAAACTCTATCAGTTTTTTGTTTTCTGTATTCCAATTTTTTTCACTTTCATTCTTCTCTTCCTTTTCTATCTCCTTTATCTTCGTCGCCGAAGGGCTGATTGGACTTCCATCCGAATGCGAACATCTGCAGCAGTCAACAACAATGGCATCTCTACATCTGAAGTGGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCCATTATTGTGTACAATGAGACATTCTTTGTCACTGACACACTATGTTCAGTCTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTGGACTGCATTGATCATTGGCTATGCAACCACACCACTTGCCCGCTCTGCCGTCTCACCGTCCTTTCTCCGTCCCAACCACCACGACCACATGTTCAGATTGAGATGGGGCTCGAATCGTCGAATGAACAACAACGCGATGGAACAACTCCTCGAGAAAGTAATCAAGCTCATCAACTTGCAACACCTCCAGTGTAA | 597 | 44.22 | MAYDHLDPSKGYSVASGPGPVSRPAPELKLYQFFVFCIPIFFTFILLFLFYLLYLRRRRADWTSIRMRTSAAVNNNGISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLCNHTTCPLCRLTVLSPSQPPRPHVQIEMGLESSNEQQRDGTTPRESNQAHQLATPPV | 198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 58061493 | 58063844 | - | Tan0006097.1 | Tan10g1839 | 766633 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g1839 | 198 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 156 | IPR013083 | - | |
Tan10g1839 | 198 | SUPERFAMILY | RING/U-box | 93 | 158 | - | - | |
Tan10g1839 | 198 | CDD | RING-H2_EL5-like | 109 | 151 | - | - | |
Tan10g1839 | 198 | MobiDBLite | consensus disorder prediction | 170 | 198 | - | - | |
Tan10g1839 | 198 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 24 | 178 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Tan10g1839 | 198 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - | |
Tan10g1839 | 198 | MobiDBLite | consensus disorder prediction | 161 | 198 | - | - | |
Tan10g1839 | 198 | Pfam | Ring finger domain | 108 | 151 | IPR001841 | - | |
Tan10g1839 | 198 | SMART | ring_2 | 109 | 150 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan07g1530 | Tan-Chr7:66545111 | Tan10g1839 | Tan-Chr10:58061493 | 4.20E-19 | dispersed | |
Tan10g1839 | Tan-Chr10:58061493 | Tan11g0967 | Tan-Chr11:7779023 | 1.90E-13 | dispersed | |
Tan10g1839 | Tan-Chr10:58061493 | Tan09g1636 | Tan-Chr9:67998134 | 1.40E-16 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g1839 | K19039 | - | csv:101219324 | 296.204 |