Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1855 ATGGTTAGCGAAGTGGCTGAGAATGGAGTAGGCGATATGGTAATTGATGGTAACGAACAGAAGCCCAAGAACGTTGTGCCTGATGGGTTCGATGCTAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTATACTGATTTTTTCAAATGGATGTCTTATGGAAATGATGGAAAGCATCCGGGGAGTGACCAATCCTATTTTGGCCGAAGAGAGTTCTCATTCACGTTGGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTTTGTCTGAAATGGAAAATTCGATCAAGGAAAAGTGTCCGTTTAAGATTGATATCGGGCCTGTATACAGCGTGGATCCTGCGAAGAGACACGCATATGCTGGTGATAATGTATTTACTCCAGTGGAGAGAGAGCTTGTTTTTGATATAGATATGACCGATTATGATGATGTTAGATATTGTTGTTCAGGAGCTGATGTTTGTTTGGATTGCTGGCCTTTAATGACTGCTGCTATCAAAGTGATTGATACTACCCTCCGAGATGACTTTGGATTTAACCACATACTCTGGGTATTTAGTGGTCGACGTGGTGTTCATTGTTGGGTCTGTGATGGCAAAGCGAGAAGGTTGTCTAATGAACAGAGAGCTGCCATTGCTGAATATTTTCATTTATATCAGGGTAATGAAAATAGTCGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTTGCGAGATCATACATAGAAGTTCTCGAGGATAGCTTTGAATCAAAATTGCTTTCTAGTCAAAAAATTTTCTCAACTGAGGAGAGATATGAGAAGATCTTAGATATGATTCATGATGAATCCATTACCTCAGAGCTTCGGGGAAGGTGGCAAGAGAATAGGCGACCCTCTAAAAAAGATGTTAACTCTGCAAGATGGGAGCAACTAAAAAATATGTTGCAATCAGGGAAACATAAGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTCGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTGTTTGTGTCCCTATCAACCCTGAACGATGTGACGAGTTTGATCCAACTACCGTACCAACTGTTGCCCAGCTTCTAGAAGAACTTAATGCAGCGGATATGGTAGTTGATGGTGAGACTGACTGGGATAGAACCTCACTCGGGGAATCGATAAGGTTTTTCAGATCATCATTCTTACAGCCATTACTGAAATCATGCAAGGATGAGCTAGAATCTTCGTACAATGCTAAAGTGCAACAGTCGAGAAATTCTCTGAGTTGGTAG 1353 40.8 MVSEVAENGVGDMVIDGNEQKPKNVVPDGFDANYLKIYYGKLFPYTDFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLEDSFESKLLSSQKIFSTEERYEKILDMIHDESITSELRGRWQENRRPSKKDVNSARWEQLKNMLQSGKHKAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRVCVPINPERCDEFDPTTVPTVAQLLEELNAADMVVDGETDWDRTSLGESIRFFRSSFLQPLLKSCKDELESSYNAKVQQSRNSLSW 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58979839 58989398 + Tan0011562.2 Tan10g1855 766649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1855 450 Gene3D DNA primase, PRIM domain 23 431 - -
Tan10g1855 450 FunFam DNA primase 22 431 - -
Tan10g1855 450 Pfam DNA primase small subunit 137 370 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1855 450 SUPERFAMILY Prim-pol domain 32 395 - -
Tan10g1855 450 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 36 388 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1855 450 CDD AE_Prim_S 44 379 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1855 450 PANTHER DNA PRIMASE SMALL SUBUNIT 33 436 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1855 K02684 - - csv:101203146 864.374
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1855 Tan-Chr10:58979839 Tan10g1857 Tan-Chr10:58980154 1.30E-270 dispersed
Tan10g1855 Tan-Chr10:58979839 Tan10g1856 Tan-Chr10:58979839 1.30E-270 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g2129 . 106 798 Core DNA Replication Machinery Family AT4G14700 67.5 7.6e-274 940.6
Tan10g2131 . 140 832 Core DNA Replication Machinery Family AT4G14700 67.5 7.6e-274 940.6
Tan10g2130 . 106 757 Core DNA Replication Machinery Family AT4G14700 63.3 5.0e-249 858.2
Tan10g2129 . 73 798 Core DNA Replication Machinery Family AT4G12620 68.2 1.8e-283 972.6
Tan10g2131 . 107 832 Core DNA Replication Machinery Family AT4G12620 68.2 1.8e-283 972.6
Tan10g2130 . 73 757 Core DNA Replication Machinery Family AT4G12620 64.2 9.1e-259 890.6
Tan02g1876 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.7 1.9e-141 499.6
Tan02g1877 . 1 277 Core DNA Replication Machinery Family AT2G37560 66.1 1.3e-108 390.6
Tan04g1369 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1370 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1371 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1373 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1374 . 9 362 Core DNA Replication Machinery Family AT2G01120 66.8 4.3e-135 478.8
Tan04g1372 . 2 351 Core DNA Replication Machinery Family AT2G01120 65.5 4.9e-131 465.3
Tan04g1375 . 9 382 Core DNA Replication Machinery Family AT2G01120 58.0 3.2e-130 462.6
Tan06g2023 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2024 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2025 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2026 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan08g0428 . 50 333 Core DNA Replication Machinery Family AT1G26840 62.8 5.5e-94 341.7
Tan08g0893 . 1 282 Core DNA Replication Machinery Family AT1G26840 63.7 6.1e-93 338.2
Tan08g0895 . 1 282 Core DNA Replication Machinery Family AT1G26840 63.7 6.1e-93 338.2
Tan08g0429 . 50 311 Core DNA Replication Machinery Family AT1G26840 61.8 3.9e-84 308.9
Tan08g0894 . 1 211 Core DNA Replication Machinery Family AT1G26840 62.0 4.5e-64 242.3
Tan02g0055 . 1 798 Core DNA Replication Machinery Family AT1G79150 59.3 3.0e-249 859.0
Tan10g1476 . 1 939 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1345.5
Tan03g2685 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 8.3e-267 916.8
Tan02g0770 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.8 0.0e+00 1174.5
Tan08g0333 . 974 1708 Core DNA Replication Machinery Family AT2G07690 78.0 0.0e+00 1109.7
Tan03g2893 . 7 821 Core DNA Replication Machinery Family AT5G44635 72.2 0.0e+00 1181.8
Tan06g0728 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1210.3
Tan05g0459 . 43 468 Core DNA Replication Machinery Family AT2G29680 62.2 7.9e-152 534.6
Tan05g0460 . 43 468 Core DNA Replication Machinery Family AT2G29680 62.2 7.9e-152 534.6
Tan11g0836 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0837 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0838 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0840 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0843 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0839 . 32 434 Core DNA Replication Machinery Family AT2G29680 61.5 8.8e-143 504.6
Tan05g0461 . 43 431 Core DNA Replication Machinery Family AT2G29680 61.2 6.7e-135 478.4
Tan11g0841 . 32 406 Core DNA Replication Machinery Family AT2G29680 61.3 2.6e-131 466.5
Tan11g0842 . 32 376 Core DNA Replication Machinery Family AT2G29680 60.9 8.8e-119 424.9
Tan05g0461 . 52 430 Core DNA Replication Machinery Family AT1G07270 64.1 3.0e-137 486.1
Tan05g0459 . 52 429 Core DNA Replication Machinery Family AT1G07270 64.0 8.7e-137 484.6
Tan05g0460 . 52 429 Core DNA Replication Machinery Family AT1G07270 64.0 8.7e-137 484.6
Tan11g0841 . 32 403 Core DNA Replication Machinery Family AT1G07270 63.4 6.5e-132 468.4
Tan11g0836 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0837 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0838 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0839 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0840 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0843 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0842 . 32 376 Core DNA Replication Machinery Family AT1G07270 62.9 4.3e-120 429.1
Tan06g1260 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.3 2.7e-260 895.2
Tan08g1920 . 26 792 Core DNA Replication Machinery Family AT3G09660 75.6 0.0e+00 1128.2
Tan08g1921 . 9 661 Core DNA Replication Machinery Family AT3G09660 80.3 7.5e-298 1020.4
Tan02g1195 . 16 645 Core DNA Replication Machinery Family AT2G14050 78.5 1.3e-289 992.6
Tan02g1194 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.2e-287 985.3
Tan05g1140 . 1 411 Core DNA Replication Machinery Family AT2G20980 55.9 9.0e-119 424.5
Tan05g1141 . 1 333 Core DNA Replication Machinery Family AT2G20980 60.4 8.1e-112 401.4
Tan01g4061 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.8 2.8e-262 902.5
Tan06g0389 . 1 197 Core DNA Replication Machinery Family AT1G80190 67.0 5.9e-74 274.6
Tan06g0390 . 1 197 Core DNA Replication Machinery Family AT1G80190 67.0 5.9e-74 274.6
Tan01g0535 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 1.2e-60 229.9
Tan11g0277 . 1 184 Core DNA Replication Machinery Family AT1G19080 61.4 2.2e-59 226.1
Tan11g0278 . 1 184 Core DNA Replication Machinery Family AT1G19080 61.4 2.2e-59 226.1
Tan11g0277 . 1 184 Core DNA Replication Machinery Family AT3G55490 61.4 2.2e-59 226.1
Tan11g0278 . 1 184 Core DNA Replication Machinery Family AT3G55490 61.4 2.2e-59 226.1
Tan10g0235 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 3.3e-50 195.7
Tan05g1616 . 1 1547 Core DNA Replication Machinery Family AT5G67100 60.2 0.0e+00 1758.8
Tan04g0094 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.7 4.0e-222 768.5
Tan04g0095 . 2 590 Core DNA Replication Machinery Family AT1G67630 59.5 8.9e-206 714.1
Tan06g1509 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 2.2e-183 639.4
Tan10g1855 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan10g1856 . 117 566 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan10g1857 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan03g1272 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1800.4
Tan08g1499 . 1 438 Core DNA Replication Machinery Family AT2G42120 76.3 1.1e-205 713.4
Tan06g1509 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 2.2e-183 639.4
Tan05g0138 . 1 2094 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2974.1
Tan05g2135 . 1 1612 Core DNA Replication Machinery Family AT1G08260 66.1 0.0e+00 2120.5
Tan05g0138 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2936.7
Tan05g2135 . 1 1719 Core DNA Replication Machinery Family AT2G27120 63.7 0.0e+00 2141.7
Tan05g1723 . 7 486 Core DNA Replication Machinery Family AT5G22110 69.0 1.5e-192 669.8
Tan05g1724 . 7 486 Core DNA Replication Machinery Family AT5G22110 69.0 1.5e-192 669.8
Tan05g0066 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.6 1.1e-305 1046.6
Tan01g1944 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 1.6e-172 602.8
Tan03g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 86.4 1.6e-180 629.4
Tan03g0579 . 1 354 Core DNA Replication Machinery Family AT5G27740 86.4 1.6e-180 629.4
Tan03g0580 . 11 288 Core DNA Replication Machinery Family AT5G27740 88.1 8.3e-140 494.2
Tan03g0581 . 11 288 Core DNA Replication Machinery Family AT5G27740 88.1 8.3e-140 494.2
Tan01g4059 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.2 8.8e-152 533.9
Tan11g1257 . 1 243 Core DNA Replication Machinery Family AT1G77470 77.4 5.6e-99 358.6
Tan08g0026 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 8.2e-252 867.1
Tan01g2266 . 34 700 Core DNA Replication Machinery Family AT2G06510 50.7 7.8e-194 674.5
Tan09g2042 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 4.2e-245 844.7
Tan01g2266 . 10 802 Core DNA Replication Machinery Family AT5G45400 51.3 5.5e-222 768.5
Tan09g2042 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.3 3.1e-238 822.0
Tan01g2266 . 5 796 Core DNA Replication Machinery Family AT4G19130 52.6 5.7e-218 755.0
Tan09g0027 . 1 172 Core DNA Replication Machinery Family AT5G26680 90.7 1.2e-84 311.2
Tan09g0026 . 1 251 Core DNA Replication Machinery Family AT5G26680 62.3 6.9e-77 285.4
Tan10g0439 . 1 1113 Core DNA Replication Machinery Family AT1G08840 52.4 7.0e-296 1014.2
Tan10g1283 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-113 407.1
Tan05g0202 . 168 804 Core DNA Replication Machinery Family AT1G08130 77.6 9.0e-296 1013.4
Tan05g0202 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 6.7e-244 840.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007924 1 1 0 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 1 1 1 1 1 2 2 1 2 3 1 35